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Comment: Comment: Should we cite sed / awk in papers?
8 months ago by amy__ ▴ 250
4
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5
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1.1k
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Should we cite sed / awk in papers?
sed awk
updated 8 months ago by 89k • written 8 months ago by ▴ 250
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0
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1.8k
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Comment: Comment: What companies do you recommend for targeted sequencing?
13 months ago by amy__ ▴ 250
4
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4
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1.8k
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Forum: What companies do you recommend for targeted sequencing?
Targeted-sequencing
13 months ago by amy__ ▴ 250
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0
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1.8k
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Comment: Comment: What companies do you recommend for targeted sequencing?
13 months ago by amy__ ▴ 250
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1
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1.0k
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Comment: Comment: Germline variant - should it be seen in the somatic vcf?
14 months ago by amy__ ▴ 250
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3
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1.0k
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Germline variant - should it be seen in the somatic vcf?
vcf somatic
updated 14 months ago by 45k • written 14 months ago by ▴ 250
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0
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514
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Advice on telling if two SNPs are on the same haplotype
ldpair halplotype co-occurance gnomad snp
19 months ago by amy__ ▴ 250
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0
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2.7k
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Comment: Comment: Help with the new nomenclature of multi-nucleotide variants
19 months ago by amy__ ▴ 250
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1
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2.7k
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Comment: Comment: Help with the new nomenclature of multi-nucleotide variants
19 months ago by amy__ ▴ 250
0
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1
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2.7k
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Comment: Comment: Help with the new nomenclature of multi-nucleotide variants
19 months ago by amy__ ▴ 250
0
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1
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2.7k
views
Comment: Comment: Help with the new nomenclature of multi-nucleotide variants
19 months ago by amy__ ▴ 250
0
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1
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2.7k
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Comment: Comment: Help with the new nomenclature of multi-nucleotide variants
20 months ago by amy__ ▴ 250
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0
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2.7k
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Comment: Comment: Help with the new nomenclature of multi-nucleotide variants
20 months ago by amy__ ▴ 250
0
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13
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2.7k
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Help with the new nomenclature of multi-nucleotide variants
bam igv multinucleotide
19 months ago by amy__ ▴ 250
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0
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2.0k
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Comment: Comment: If the mane transcript isn't available should you use the canonical transcript?
20 months ago by amy__ ▴ 250
2
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4
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2.0k
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If the mane transcript isn't available should you use the canonical transcript?
ensembl mane gnomad canonical
20 months ago by amy__ ▴ 250
0
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0
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2.0k
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Comment: Comment: If the mane transcript isn't available should you use the canonical transcript?
20 months ago by amy__ ▴ 250
0
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1
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879
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LOFTEE flag on GnomAD - END_TRUNC
loftee gnomad
updated 20 months ago by 166k • written 20 months ago by ▴ 250
0
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1
reply
765
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Extracting LOF variants and incidence from GnomAD for a list of genes
Gnomad LOF genes
updated 21 months ago by 4.8k • written 22 months ago by ▴ 250
1
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0
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2.3k
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Comment: Comment: Genotypes in vcf files
23 months ago by amy__ ▴ 250
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0
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2.3k
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Comment: Comment: Genotypes in vcf files
23 months ago by amy__ ▴ 250
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1
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2.3k
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Comment: Comment: Genotypes in vcf files
23 months ago by amy__ ▴ 250
2
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6
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2.3k
views
Genotypes in vcf files
genotypes vcf
updated 23 months ago by 23k • written 23 months ago by ▴ 250
0
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0
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639
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Filtering vcf by strand bias / annotating strand bias on
Vcf
updated 2.0 years ago by 45k • written 2.0 years ago by ▴ 250
0
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1
reply
854
views
How to find the most representative protein data base ID for your protein?
modelling protein database
updated 2.1 years ago by 154k • written 2.1 years ago by ▴ 250
2
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1
reply
1.5k
views
Answer: Answer: Why do the same genetic variants sometimes result in different amino acids in th
2.2 years ago by amy__ ▴ 250
0
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1
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1.1k
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Comment: Comment: Classification for low quality variant on IGV
2.2 years ago by amy__ ▴ 250
1
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3
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1.1k
views
Classification for low quality variant on IGV
bam igv
updated 2.2 years ago by ★ 3.1k • written 2.2 years ago by ▴ 250
0
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0
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1.9k
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Comment: Comment: IGV - is it possible to tell what allele a read is from?
2.3 years ago by amy__ ▴ 250
6
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2
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1.9k
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IGV - is it possible to tell what allele a read is from?
WES reads IGV
2.3 years ago by amy__ ▴ 250
0
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0
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4.0k
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Comment: Comment: Deepvariant variant calling by singularity
2.3 years ago by amy__ ▴ 250
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0
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1.4k
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Comment: Comment: With cutadapt, is it possible to completely trim reads to empty reads instead of
2.3 years ago by amy__ ▴ 250
0
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0
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944
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Comment: Comment: Low coverage in specific exons of genes - sequencing errors?
2.3 years ago by amy__ ▴ 250
3
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1
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5.4k
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Answer: Answer: Don't choose Novogene for your sequencing projects
2.3 years ago by amy__ ▴ 250
1
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2
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944
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Low coverage in specific exons of genes - sequencing errors?
coverage
2.3 years ago by amy__ ▴ 250
0
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1
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4.0k
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Comment: Comment: Deepvariant variant calling by singularity
2.3 years ago by amy__ ▴ 250
0
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1
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4.0k
views
Comment: Comment: Deepvariant variant calling by singularity
2.3 years ago by amy__ ▴ 250
2
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0
replies
3.1k
views
Comment: Comment: Exome alignment and preprocessing: When I perform an exome alignment, should I u
2.4 years ago by amy__ ▴ 250
2
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1
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3.1k
views
Answer: Answer: Exome alignment and preprocessing: When I perform an exome alignment, should I u
2.4 years ago by amy__ ▴ 250
0
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0
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1.6k
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Comment: Comment: Difference between USCS exon coordinates and ensembl
2.4 years ago by amy__ ▴ 250
0
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1
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1.6k
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Comment: Comment: Difference between USCS exon coordinates and ensembl
2.4 years ago by amy__ ▴ 250
1
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4
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1.6k
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Difference between USCS exon coordinates and ensembl
exons Ensembl
2.4 years ago by amy__ ▴ 250
0
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0
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695
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GC content of WES cohort
WES FASTQC GC-content
updated 2.5 years ago by 45k • written 2.5 years ago by ▴ 250
0
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0
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3.7k
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Answer: Answer: How to calculate the coverage of list of genes in whole exome data
2.5 years ago by amy__ ▴ 250
1
vote
1
reply
925
views
Variant depth cut off - justification
VCF depth variant
updated 2.5 years ago by ★ 3.1k • written 2.5 years ago by ▴ 250
0
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1
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1.9k
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Comment: Comment: Linux command to edit CHROM column in VCF file
2.7 years ago by amy__ ▴ 250
0
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0
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1.4k
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Comment: Comment: Is it possible to do bedtools multicov across the entire genome?
2.7 years ago by amy__ ▴ 250
4
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3
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1.4k
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Is it possible to do bedtools multicov across the entire genome?
bedtools
updated 2.4 years ago by 45k • written 2.7 years ago by ▴ 250
0
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0
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731
views
Haloplex HS - should you remove duplicates?
deduplicate Haloplex duplicates
2.7 years ago by amy__ ▴ 250
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