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0
votes
1
reply
1.2k
views
Normalization - Tissue specificity analysis
gtex
updated 5 months ago by
Pallavi
• 0 • written 4.5 years ago by
Filago
▴ 110
4
votes
10
replies
4.5k
views
6 follow
VEP tab/vcf - Different output
VEP
ensembl
updated 20 months ago by
Ram
45k • written 3.5 years ago by
Filago
▴ 110
0
votes
1
reply
1.1k
views
CADD INDEL FILE
INDEL
CADD
updated 21 months ago by
sindy_roby
• 0 • written 4.2 years ago by
Filago
▴ 110
0
votes
1
reply
1.1k
views
Loftee no splice site annotations
Loftee
VEP
updated 22 months ago by
AMARU
• 0 • written 3.6 years ago by
Filago
▴ 110
0
votes
0
replies
588
views
Training gkm-svm sequence length
dnaseseq
gkm-svm
deltasvm
2.6 years ago by
Filago
▴ 110
0
votes
1
reply
770
views
Filter VEP for same entry
VEP
updated 2.7 years ago by
barslmn
★ 2.4k • written 2.7 years ago by
Filago
▴ 110
0
votes
0
replies
496
views
When to remove releated samples in GATK
GATK
2.8 years ago by
Filago
▴ 110
0
votes
0
replies
1.1k
views
MACS2 not working in paired end mode
NGS
bowtie2
macs2
peak
calling
2.9 years ago by
Filago
▴ 110
1
vote
1
reply
902
views
Answer:
Answer: GATK 3.8 do not exclude annotations
3.0 years ago by
Filago
▴ 110
1
vote
2
replies
902
views
GATK 3.8 do not exclude annotations
GATK3
updated 3.0 years ago by
Ram
45k • written 3.0 years ago by
Filago
▴ 110
0
votes
1
reply
1.7k
views
Comment:
Comment: Install GATK 3.8 with conda
updated 3.0 years ago by
Ram
45k • written 3.0 years ago by
Filago
▴ 110
1
vote
3
replies
1.7k
views
Install GATK 3.8 with conda
GS
GATK
updated 3.0 years ago by
Ram
45k • written 3.0 years ago by
Filago
▴ 110
0
votes
0
replies
670
views
gnomAD RF filter
gnomAD
VCF
NGS
3.1 years ago by
Filago
▴ 110
0
votes
0
replies
1.9k
views
Comment:
Comment: VEP v107 installation problem - CHECKSUMS
3.2 years ago by
Filago
▴ 110
0
votes
1
reply
1.9k
views
Comment:
Comment: VEP v107 installation problem - CHECKSUMS
3.2 years ago by
Filago
▴ 110
2
votes
5
replies
1.9k
views
VEP v107 installation problem - CHECKSUMS
ENSEMBL
VEP
3.2 years ago by
Filago
▴ 110
0
votes
0
replies
868
views
Comment:
Comment: Which tool for CRM enrichment?
3.2 years ago by
Filago
▴ 110
0
votes
2
replies
868
views
Which tool for CRM enrichment?
CRM
TFBS
3.2 years ago by
Filago
▴ 110
0
votes
1
reply
1.2k
views
Comment:
Comment: VEP Could not get current species list - using predefined list instead
3.4 years ago by
Filago
▴ 110
0
votes
3
replies
1.2k
views
VEP Could not get current species list - using predefined list instead
Ensembl
VEP
updated 3.4 years ago by
Ben Moore
★ 2.4k • written 3.4 years ago by
Filago
▴ 110
0
votes
0
replies
573
views
DBD::mysql required for VEP installation?
VEP
Perl
3.4 years ago by
Filago
▴ 110
0
votes
0
replies
591
views
BCFTOOLS filter per sample per variant
VCF
bcftools
3.4 years ago by
Filago
▴ 110
0
votes
1
reply
4.5k
views
Comment:
Comment: VEP tab/vcf - Different output
3.5 years ago by
Filago
▴ 110
0
votes
0
replies
579
views
VEP polypen humvar and humdiv
Polyphen
VEP
3.5 years ago by
Filago
▴ 110
0
votes
0
replies
4.7k
views
Comment:
Comment: VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgz
3.6 years ago by
Filago
▴ 110
0
votes
1
reply
4.7k
views
Comment:
Comment: VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgz
3.6 years ago by
Filago
▴ 110
0
votes
0
replies
4.7k
views
Comment:
Comment: VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgz
3.6 years ago by
Filago
▴ 110
0
votes
1
reply
4.7k
views
Comment:
Comment: VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgz
3.6 years ago by
Filago
▴ 110
0
votes
1
reply
4.7k
views
Comment:
Comment: VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgz
3.6 years ago by
Filago
▴ 110
2
votes
7
replies
4.7k
views
VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgzip
VEP
updated 3.6 years ago by
zx8754
12k • written 3.6 years ago by
Filago
▴ 110
1
vote
0
replies
2.8k
views
Comment:
Comment: VEP: MSG: ERROR: Cannot use format vcf without Bio::DB::HTS::Tabix module instal
3.6 years ago by
Filago
▴ 110
0
votes
0
replies
563
views
Freebayes ABP
Freebayes
3.6 years ago by
Filago
▴ 110
2
votes
0
replies
7.7k
views
Comment:
Comment: TMM-Normalization
3.9 years ago by
Filago
▴ 110
1
vote
2
replies
2.8k
views
VEP: MSG: ERROR: Cannot use format vcf without Bio::DB::HTS::Tabix module installed
VCF
Ensembl
gnomAD
VEP
3.6 years ago by
Filago
▴ 110
1
vote
0
replies
776
views
Weighted random walk in R
Walk
Ranwom
R
Graph
4.2 years ago by
Filago
▴ 110
0
votes
1
reply
3.6k
views
Comment:
Comment: Get REVEL plugin started with VEP
4.2 years ago by
Filago
▴ 110
1
vote
3
replies
3.6k
views
Get REVEL plugin started with VEP
VCF
REVEL
VEP
updated 4.2 years ago by
2c98a9f9
• 0 • written 4.2 years ago by
Filago
▴ 110
0
votes
0
replies
2.9k
views
Comment:
Comment: 1000 Genomes exomes as controls
4.3 years ago by
Filago
▴ 110
0
votes
0
replies
852
views
COLOC.abf priors
COLOC
4.3 years ago by
Filago
▴ 110
4
votes
2
replies
1.1k
views
Remote access- data security
Remote-Access
updated 4.3 years ago by
bernatgel
★ 3.4k • written 4.3 years ago by
Filago
▴ 110
0
votes
1
reply
3.7k
views
Comment:
Comment: plink2 reorder alleles by fasta reference
4.3 years ago by
Filago
▴ 110
0
votes
1
reply
3.7k
views
Comment:
Comment: plink2 reorder alleles by fasta reference
4.3 years ago by
Filago
▴ 110
2
votes
5
replies
3.7k
views
plink2 reorder alleles by fasta reference
PLINK2
updated 4.3 years ago by
chrchang523
11k • written 4.3 years ago by
Filago
▴ 110
0
votes
0
replies
2.1k
views
Answer:
Answer: Corrupted dbsnp-vcf?
4.3 years ago by
Filago
▴ 110
0
votes
0
replies
2.1k
views
Comment:
Comment: Corrupted dbsnp-vcf?
4.3 years ago by
Filago
▴ 110
0
votes
3
replies
2.1k
views
Corrupted dbsnp-vcf?
BCFTOOLS
VCF
Imputation
4.3 years ago by
Filago
▴ 110
6
votes
3
replies
7.9k
views
How to set up bcftools plugins?
BCFTOOLS
updated 4.3 years ago by
ATpoint
89k • written 4.3 years ago by
Filago
▴ 110
1
vote
0
replies
1.2k
views
Colocalization window size
COLOC
eqtl
R
gwas
updated 4.3 years ago by
zx8754
12k • written 4.3 years ago by
Filago
▴ 110
0
votes
4
replies
1.6k
views
> 90% samples, DP > 10
VCF
R
DP
updated 4.3 years ago by
sbstevenlee
▴ 480 • written 4.3 years ago by
Filago
▴ 110
2
votes
1
reply
1.8k
views
Preparing data for kinship calculations
PRUNING
VCF
PLINK2
KING
updated 4.3 years ago by
Ram
45k • written 4.3 years ago by
Filago
▴ 110
62 results • Page
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