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How to filter the BAM file using barcode list produced by 10x pipelines?
list barcode
updated 11 months ago by 141k • written 16 months ago by ▴ 30
1
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0
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556
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Comment: Comment: How to make cut off linein cluster,
13 months ago by Info.shi ▴ 30
3
votes
2
replies
556
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How to make cut off linein cluster,
dendogram Cutoff R
updated 13 months ago by 141k • written 13 months ago by ▴ 30
0
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1
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1.4k
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Comment: Comment: How to label by colour in PCA plot?
15 months ago by Info.shi ▴ 30
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1
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1.4k
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Comment: Comment: How to label by colour in PCA plot?
15 months ago by Info.shi ▴ 30
0
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5
replies
1.4k
views
How to label by colour in PCA plot?
label PCA plot. colure
updated 15 months ago by 11k • written 15 months ago by ▴ 30
0
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1
reply
513
views
Why barcode list doesn't filter exactly according to the same as list?
bam barcode
15 months ago by Info.shi ▴ 30
0
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1
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1.5k
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Comment: Comment: how to get fastq file from cellranger?
16 months ago by Info.shi ▴ 30
0
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1
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1.5k
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Comment: Comment: how to get fastq file from cellranger?
16 months ago by Info.shi ▴ 30
0
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1
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1.5k
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Comment: Comment: how to get fastq file from cellranger?
16 months ago by Info.shi ▴ 30
0
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1
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1.5k
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Comment: Comment: how to get fastq file from cellranger?
16 months ago by Info.shi ▴ 30
0
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9
replies
1.5k
views
how to get fastq file from cellranger?
Cellranger mkfastq
updated 16 months ago by 141k • written 16 months ago by ▴ 30
3
votes
3
replies
1.9k
views
Can we use UMAP clustering on bulk data?
R UMAP
updated 19 months ago by 43k • written 19 months ago by ▴ 30
1
vote
2
replies
911
views
How to change gene coordinate in gtf file?
perl python R
updated 2.2 years ago by 100k • written 2.2 years ago by ▴ 30
0
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0
replies
626
views
How to call variant by --max-depth for RNAseq
bcftools Samtools
updated 10 months ago by 43k • written 2.4 years ago by ▴ 30
1
vote
1
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806
views
How to call variant minimum 3 read coverage to make consensus?
bcftools mpileup
updated 2.5 years ago by 100k • written 2.5 years ago by ▴ 30
0
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0
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2.9k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
2.5 years ago by Info.shi ▴ 30
0
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1
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2.9k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
2.5 years ago by Info.shi ▴ 30
0
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1
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2.9k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
2.5 years ago by Info.shi ▴ 30
0
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1
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2.9k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
2.5 years ago by Info.shi ▴ 30
0
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1
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2.9k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
2.5 years ago by Info.shi ▴ 30
0
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0
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2.9k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
2.5 years ago by Info.shi ▴ 30
0
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1
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2.9k
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Comment: Comment: What will the the classic approach is to make pairwise comparisons between th
2.5 years ago by Info.shi ▴ 30
5
votes
13
replies
2.9k
views
What will the the classic approach is to make pairwise comparisons between the groups in edgeR?
edgeR
2.5 years ago by Info.shi ▴ 30
0
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1
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1.2k
views
Comment: Comment: How to remove Illumina TruSeq Index adapters reverse (R2 reads )
2.6 years ago by Info.shi ▴ 30
2
votes
3
replies
1.2k
views
How to remove Illumina TruSeq Index adapters reverse (R2 reads )
Illumina adapter sequence TruSeq
updated 2.6 years ago by 141k • written 2.6 years ago by ▴ 30
3
votes
2
replies
1.7k
views
How to convert (Newick) tree topology without branch length!
sed awk perl
updated 3.0 years ago by 21k • written 3.0 years ago by ▴ 30
0
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0
replies
470
views
How to Write same Gene name in column with strain identifier!
awk NJ perl Phylogeny
updated 3.0 years ago by 3.9k • written 3.0 years ago by ▴ 30
6
votes
5
replies
1.1k
views
How to create matrix from row data
sed perl R awk
updated 3.0 years ago by 21k • written 3.0 years ago by ▴ 30
0
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1
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1.1k
views
Comment: Comment: how to create matrix from row data.
3.0 years ago by Info.shi ▴ 30
5
votes
5
replies
2.6k
views
How to remove all-N sequence entries from fasta file.
awk perl
updated 3.0 years ago by 21k • written 3.0 years ago by ▴ 30
2
votes
1
reply
2.4k
views
How to make consensus sequence from aligned reads ?
sequence Transcriptome aligned consensus reads
3.0 years ago by Info.shi ▴ 30
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