Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
0
votes
0
replies
342
views
What Major Copy Number (MCC) and Copy Number (CN) means for CANVAS
CANVAS
VCF
22 months ago by
ManuelDB
▴ 80
0
votes
2
replies
565
views
Beedtools intersect unable to open a vcf file
VCF
Bedtools
updated 10 months ago by
Ram
43k • written 23 months ago by
ManuelDB
▴ 80
0
votes
1
reply
364
views
Morbidity inheritance dataset
inheritance
Morbidity
updated 23 months ago by
Michael
54k • written 23 months ago by
ManuelDB
▴ 80
1
vote
1
reply
645
views
What LOH means in CANVAS
CANVAS
updated 23 months ago by
Carambakaracho
★ 3.2k • written 23 months ago by
ManuelDB
▴ 80
0
votes
1
reply
1.1k
views
Comment:
Comment: How annotation can be validated
23 months ago by
ManuelDB
▴ 80
0
votes
0
replies
1.1k
views
Comment:
Comment: How annotation can be validated
23 months ago by
ManuelDB
▴ 80
0
votes
0
replies
285
views
Can I infer the Zygosity of a CNV based on the number SNPs call in its region?
CNV
23 months ago by
ManuelDB
▴ 80
0
votes
2
replies
1.1k
views
Comment:
Comment: How annotation can be validated
23 months ago by
ManuelDB
▴ 80
4
votes
1
reply
505
views
bedtools interset doesn't return a VCF file?
bedtools
updated 2.0 years ago by
Trivas
★ 1.7k • written 2.0 years ago by
ManuelDB
▴ 80
1
vote
1
reply
993
views
How is the best way to filter a BED file to get specific exons from their gene ID
bed
updated 13 months ago by
Ram
43k • written 2.0 years ago by
ManuelDB
▴ 80
2
votes
5
replies
1.4k
views
Strange error when using gzip.open with a VCF file
vcf
gzip
pandas
updated 2.0 years ago by
IkramInf
▴ 20 • written 2.2 years ago by
ManuelDB
▴ 80
0
votes
0
replies
303
views
Overlapping CNVs against NSPs
Bedtools
VCF
CNV
2.0 years ago by
ManuelDB
▴ 80
0
votes
0
replies
345
views
Does VarScan output work with NGS Benchmarking v1.6.?
VarScan
NGS_Benchmarking
2.1 years ago by
ManuelDB
▴ 80
0
votes
1
reply
2.5k
views
Comment:
Comment: File write failed (wrong size) when filtering a bam file with interset
2.1 years ago by
ManuelDB
▴ 80
1
vote
5
replies
2.5k
views
File write failed (wrong size) when filtering a bam file with interset
bedtools
updated 2.1 years ago by
ATpoint
82k • written 2.1 years ago by
ManuelDB
▴ 80
0
votes
0
replies
2.5k
views
Comment:
Comment: File write failed (wrong size) when filtering a bam file with interset
updated 2.1 years ago by
GenoMax
142k • written 2.1 years ago by
ManuelDB
▴ 80
0
votes
0
replies
273
views
How to apply probabilistic method to call variants in a simple example.
Bayes-theorem
2.1 years ago by
ManuelDB
▴ 80
0
votes
1
reply
760
views
Comment:
Comment: Calling variants after using different read alignment programs
2.1 years ago by
ManuelDB
▴ 80
3
votes
3
replies
760
views
Calling variants after using different read alignment programs
Bowtie2
IGV
BWA
updated 2.1 years ago by
d-cameron
★ 2.9k • written 2.1 years ago by
ManuelDB
▴ 80
1
vote
0
replies
678
views
Comment:
Comment: Unexpected results when alignment FASTQ files with different read alignments
2.1 years ago by
ManuelDB
▴ 80
0
votes
2
replies
1.4k
views
Comment:
Comment: Cannot read non-existent file: when executing MarkDuplicates in a script
2.1 years ago by
ManuelDB
▴ 80
0
votes
0
replies
573
views
Comment:
Comment: Bus error (core dumped) when Aligning contigs to the reference in QUAST
2.1 years ago by
ManuelDB
▴ 80
0
votes
0
replies
573
views
Comment:
Comment: Bus error (core dumped) when Aligning contigs to the reference in QUAST
2.1 years ago by
ManuelDB
▴ 80
0
votes
3
replies
573
views
Bus error (core dumped) when Aligning contigs to the reference in QUAST
Spades
QUAST
2.1 years ago by
ManuelDB
▴ 80
0
votes
1
reply
1.8k
views
Comment:
Comment: Troubles running IGV on a server.
2.1 years ago by
ManuelDB
▴ 80
0
votes
1
reply
1.8k
views
Comment:
Comment: Troubles running IGV on a server.
2.1 years ago by
ManuelDB
▴ 80
0
votes
1
reply
1.8k
views
Comment:
Comment: Troubles running IGV on a server.
2.1 years ago by
ManuelDB
▴ 80
0
votes
7
replies
1.8k
views
Troubles running IGV on a server.
IGV
updated 2.1 years ago by
GenoMax
142k • written 2.1 years ago by
ManuelDB
▴ 80
0
votes
0
replies
2.9k
views
Comment:
Comment: How do I count the real total reads from a fastq file?
2.1 years ago by
ManuelDB
▴ 80
0
votes
1
reply
678
views
Comment:
Comment: Unexpected results when alignment FASTQ files with different read alignments
2.1 years ago by
ManuelDB
▴ 80
4
votes
4
replies
678
views
Unexpected results when alignment FASTQ files with different read alignments
Bowtie2
BWE
2.1 years ago by
ManuelDB
▴ 80
8
votes
10
replies
2.1k
views
6 follow
Are not all duplicated reads removed when applying removal duplicated algorithms?
ngs
FASTQC
updated 2.1 years ago by
d-cameron
★ 2.9k • written 2.1 years ago by
ManuelDB
▴ 80
0
votes
2
replies
2.1k
views
Comment:
Comment: Are not all duplicated reads removed when applying removal duplicated algorithms
2.1 years ago by
ManuelDB
▴ 80
0
votes
0
replies
353
views
QUAL cut-off in variants filtering
NGS
2.1 years ago by
ManuelDB
▴ 80
0
votes
0
replies
322
views
What is the relationship between the per-base sequence quality of a FASTQ file and the QUAL of a VCF file
NGS
2.2 years ago by
ManuelDB
▴ 80
0
votes
0
replies
2.2k
views
Comment:
Comment: How do you know if a variant is in cis or trans when looking at it with IGV
2.2 years ago by
ManuelDB
▴ 80
4
votes
4
replies
2.2k
views
How do you know if a variant is in cis or trans when looking at it with IGV
IGV
2.2 years ago by
ManuelDB
▴ 80
0
votes
1
reply
860
views
Comment:
Comment: Why is needed a genome reference when calling variants
2.2 years ago by
ManuelDB
▴ 80
5
votes
3
replies
860
views
Why is needed a genome reference when calling variants
NGS
updated 2.2 years ago by
GenoMax
142k • written 2.2 years ago by
ManuelDB
▴ 80
0
votes
1
reply
649
views
Comment:
Comment: Find a position in IGV when variant is giving in the format gene_name 12345-1G>
2.2 years ago by
ManuelDB
▴ 80
1
vote
3
replies
649
views
Find a position in IGV when variant is giving in the format gene_name 12345-1G>A
igv
updated 2.2 years ago by
abedkurdi10
▴ 190 • written 2.2 years ago by
ManuelDB
▴ 80
0
votes
0
replies
554
views
Plotting the density of CNV with karyoploteR
karyoploteR
2.2 years ago by
ManuelDB
▴ 80
0
votes
1
reply
1.2k
views
Comment:
Comment: How to extract gene name and transcript name from the INFO column of a VCF file
2.2 years ago by
ManuelDB
▴ 80
1
vote
3
replies
1.2k
views
How to extract gene name and transcript name from the INFO column of a VCF file
pandas
VCF
updated 2.2 years ago by
raphael.B
▴ 520 • written 2.2 years ago by
ManuelDB
▴ 80
0
votes
0
replies
1.4k
views
Comment:
Comment: Strange error when using gzip.open with a VCF file
2.2 years ago by
ManuelDB
▴ 80
0
votes
3
replies
656
views
Why in Biomart Exon region start is before than Gene start?
Biomart
updated 2.2 years ago by
Istvan Albert
100k • written 2.2 years ago by
ManuelDB
▴ 80
0
votes
0
replies
520
views
Comment:
Comment: iterating over LiftOver in big dataset
2.2 years ago by
ManuelDB
▴ 80
0
votes
2
replies
520
views
iterating over LiftOver in big dataset
pyliftover
LiftOver
2.2 years ago by
ManuelDB
▴ 80
0
votes
0
replies
696
views
Comment:
Comment: Unrecognised chromosome value (e.g. chr16_KI270853v1_alt) in the UCSC Genome Bro
2.2 years ago by
ManuelDB
▴ 80
4
votes
3
replies
857
views
What the last output of liftover means?
liftover
Python
updated 2.2 years ago by
Wayne
★ 2.0k • written 2.2 years ago by
ManuelDB
▴ 80
132 results • Page
2 of 3
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6