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0
votes
3
replies
427
views
find DEG of monocle 3 object using tradeSeq
tradeSeq
updated 4 months ago by 44k • written 4 months ago by ▴ 100
0
votes
0
replies
202
views
monocle 3-- Could not get node in small cluster
monocle3
5 months ago by synat.keam ▴ 100
0
votes
0
replies
290
views
how to read graph_test output of monocle 3
monocle3
5 months ago by synat.keam ▴ 100
0
votes
0
replies
375
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
6 months ago by synat.keam ▴ 100
2
votes
4
replies
488
views
Addmetadata to seurat obj
seurat
6 months ago by synat.keam ▴ 100
0
votes
1
reply
374
views
How plot multiple enrichment plot together
singlecell
updated 6 months ago by ★ 2.5k • written 6 months ago by ▴ 100
3
votes
2
replies
1.3k
views
Fail to install umap-learn in R
cellchat R
updated 6 months ago by 44k • written 7 months ago by ▴ 100
0
votes
0
replies
239
views
Differentially expressed genes across condition
singlecell
7 months ago by synat.keam ▴ 100
0
votes
2
replies
1.4k
views
Filter out doublet and Clustering
single-cell
updated 7 months ago by ★ 1.8k • written 11 months ago by ▴ 100
2
votes
2
replies
361
views
Sample clustering from 10X single cell
clustering
7 months ago by synat.keam ▴ 100
8
votes
7
replies
897
views
adjusting parameters in ViolinPlot did not work
single-cell
updated 8 months ago by 44k • written 8 months ago by ▴ 100
0
votes
0
replies
496
views
Seurat Figure legend
single cell
8 months ago by synat.keam ▴ 100
14
votes
10
replies
1.5k
views
How to remove center population from seurat cluster
single-cell
10 months ago by synat.keam ▴ 100
5
votes
3
replies
920
views
Rstudio cloud
R single-cell
10 months ago by synat.keam ▴ 100
3
votes
2
replies
1.6k
views
Should I scale all genes in single cell Seurat?
singlecell
10 months ago by synat.keam ▴ 100
3
votes
2
replies
3.8k
views
Cellcyclescoring did not work in Seurat V5
singlecell
updated 10 months ago by ★ 1.7k • written 10 months ago by ▴ 100
11
votes
6
replies
1.7k
views
6 follow
UMAP or TSNE for single cells?
single-cell
updated 10 months ago by ▴ 40 • written 11 months ago by ▴ 100
3
votes
2
replies
1.2k
views
Running for loop for resolution of Seurat got error: Error: Not an S4 object.
R single seurat cell
updated 11 months ago by 12k • written 11 months ago by ▴ 100
0
votes
3
replies
660
views
Reproducible seurat clustering
seurat clustering single-cell
updated 11 months ago by 44k • written 11 months ago by ▴ 100
4
votes
2
replies
1.0k
views
Annoate complex heatmap columns
complexheatmap
updated 11 months ago by 44k • written 12 months ago by ▴ 100
5
votes
6
replies
1.6k
views
Cluster annotation in single cell
Single-cell
updated 12 months ago by ▴ 230 • written 13 months ago by ▴ 100
0
votes
0
replies
480
views
DotPlot error in Seurat
Seurat single-cell
updated 12 months ago by 44k • written 12 months ago by ▴ 100
6
votes
2
replies
3.5k
views
Picking optimal resolution for single cell in seurat pipeline
single-cell
updated 12 months ago by 44k • written 12 months ago by ▴ 100
3
votes
2
replies
651
views
Feature plot not applicable for RunTSNE object in seurat?
harmony Seurat single-cell
12 months ago by synat.keam ▴ 100
1
vote
3
replies
747
views
comparision of umap single cell
single-cell
12 months ago by synat.keam ▴ 100
3
votes
4
replies
950
views
Generate a fraction of immune cell between two condition from single cell RNAseq
single-cell
13 months ago by synat.keam ▴ 100
3
votes
1
reply
473
views
Automatic Cluster Annotation to the subsets of immune cells
single-cell
updated 11 months ago by 44k • written 13 months ago by ▴ 100
3
votes
1
reply
674
views
Overlapping cluster/annotation
Single-Cell
updated 13 months ago by 4.3k • written 13 months ago by ▴ 100
0
votes
1
reply
563
views
Drawing label around clusters
cells Single
updated 13 months ago by ★ 28k • written 13 months ago by ▴ 100
3
votes
2
replies
1.3k
views
Could not view/find meta.data and Error merging three seurat object
Seurat single-cell
updated 13 months ago by 44k • written 13 months ago by ▴ 100
6
votes
6
replies
1.2k
views
Integration in single cell RNAseq: What does it mean?
Single cell
updated 13 months ago by ▴ 340 • written 13 months ago by ▴ 100
8
votes
2
replies
838
views
Bulk and Single cell TCRSeq analysis
TCRSeq
updated 13 months ago by ★ 4.4k • written 13 months ago by ▴ 100
0
votes
0
replies
381
views
Multi-sample integration analysis of flow cytometry in R
Cytometry R Flow
18 months ago by synat.keam ▴ 100
1
vote
1
reply
1.1k
views
Filter top differentially experssed for pheatmap from DESeq2
DESeq2 pheatmap
updated 2.1 years ago by 85k • written 2.1 years ago by ▴ 100
1
vote
2
replies
638
views
Ordering row with high expression at the top rather than the bottom
pheatmap
2.1 years ago by synat.keam ▴ 100
3
votes
4
replies
1.6k
views
PlotPCA shows small plot in plot section of R studio
DESeq2 PlotPCA
2.1 years ago by synat.keam ▴ 100
0
votes
2
replies
1.2k
views
Time course RNA seq with DESEq2
DESeq2
2.2 years ago by synat.keam ▴ 100
0
votes
2
replies
776
views
Pipeline with HISAT bulk RNA seq alignment
HISTA
2.2 years ago by synat.keam ▴ 100
6
votes
4
replies
1.3k
views
Reference genome fasta file
genome Reference
2.2 years ago by synat.keam ▴ 100
0
votes
2
replies
857
views
Single cell
SingleCell
2.7 years ago by synat.keam ▴ 100
0
votes
1
reply
886
views
Understanding how to get enrichment score in GSEA software from broad institute
GSEA
updated 9 weeks ago by ★ 4.3k • written 2.7 years ago by ▴ 100
3
votes
4
replies
1.8k
views
Filter out genes less than 10 count from DESeq2 does not work
DESeq2
2.7 years ago by synat.keam ▴ 100
5
votes
4
replies
1.2k
views
Hide column label of genes
geneexpression
2.9 years ago by synat.keam ▴ 100
0
votes
0
replies
690
views
How to read WGCNA edge file output to find the hub genes_ GO ontology
WGCNA hubgene
2.9 years ago by synat.keam ▴ 100
3
votes
4
replies
4.1k
views
Treeplot
ClusterProfiler
2.9 years ago by synat.keam ▴ 100
0
votes
6
replies
3.1k
views
Entrez Gene ID
EntrezID ontology GO ClusterProfiler
2.9 years ago by synat.keam ▴ 100
3
votes
4
replies
1.3k
views
Filtering Gene by mean expression
Gene meanExpression Filter
updated 2.9 years ago by ▴ 810 • written 2.9 years ago by ▴ 100
4
votes
3
replies
1.9k
views
filtering most variable genes
RNAseq
updated 2.9 years ago by 14k • written 2.9 years ago by ▴ 100
0
votes
0
replies
605
views
Finding whether WGCNA module is associated with different categorical treatment conditions
WGCNA
2.9 years ago by synat.keam ▴ 100
3
votes
4
replies
1.2k
views
Weird WGCNA plot
WGCNA
2.9 years ago by synat.keam ▴ 100
54 results • Page 1 of 2
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