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6
votes
8
replies
3.0k
views
7 follow
Cluster annotation in single cell
Single-cell
updated 11 weeks ago by • 0 • written 22 months ago by ▴ 120
0
votes
1
reply
728
views
monocle 3-- Could not get node in small cluster
monocle3
updated 4 months ago by ★ 2.7k • written 14 months ago by ▴ 120
3
votes
4
replies
6.8k
views
Cellcyclescoring did not work in Seurat V5
Seurat single-cell
updated 8 months ago by 6.4k • written 19 months ago by ▴ 120
0
votes
3
replies
895
views
find DEG of monocle 3 object using tradeSeq
tradeSeq
updated 13 months ago by 45k • written 13 months ago by ▴ 120
0
votes
0
replies
539
views
how to read graph_test output of monocle 3
monocle3
14 months ago by synat.keam ▴ 120
0
votes
0
replies
874
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
15 months ago by synat.keam ▴ 120
2
votes
4
replies
859
views
Addmetadata to seurat obj
seurat
15 months ago by synat.keam ▴ 120
0
votes
1
reply
716
views
How plot multiple enrichment plot together
singlecell
updated 15 months ago by ★ 3.0k • written 15 months ago by ▴ 120
3
votes
2
replies
2.9k
views
Fail to install umap-learn in R
cellchat R
updated 15 months ago by 45k • written 16 months ago by ▴ 120
0
votes
0
replies
410
views
Differentially expressed genes across condition
singlecell
16 months ago by synat.keam ▴ 120
1
vote
2
replies
2.6k
views
Filter out doublet and Clustering
single-cell
updated 16 months ago by ★ 1.9k • written 20 months ago by ▴ 120
2
votes
2
replies
673
views
Sample clustering from 10X single cell
clustering
17 months ago by synat.keam ▴ 120
8
votes
7
replies
1.5k
views
adjusting parameters in ViolinPlot did not work
single-cell
updated 17 months ago by 45k • written 17 months ago by ▴ 120
0
votes
0
replies
800
views
Seurat Figure legend
single cell
17 months ago by synat.keam ▴ 120
14
votes
10
replies
2.7k
views
How to remove center population from seurat cluster
single-cell
19 months ago by synat.keam ▴ 120
5
votes
3
replies
1.5k
views
Rstudio cloud
R single-cell
19 months ago by synat.keam ▴ 120
4
votes
2
replies
3.1k
views
Should I scale all genes in single cell Seurat?
singlecell
19 months ago by synat.keam ▴ 120
11
votes
6
replies
3.4k
views
6 follow
UMAP or TSNE for single cells?
single-cell
updated 20 months ago by ▴ 40 • written 20 months ago by ▴ 120
3
votes
2
replies
2.2k
views
Running for loop for resolution of Seurat got error: Error: Not an S4 object.
R single seurat cell
updated 20 months ago by 12k • written 20 months ago by ▴ 120
0
votes
3
replies
1.0k
views
Reproducible seurat clustering
seurat clustering single-cell
updated 20 months ago by 45k • written 20 months ago by ▴ 120
4
votes
2
replies
1.8k
views
Annoate complex heatmap columns
complexheatmap
updated 21 months ago by 45k • written 21 months ago by ▴ 120
0
votes
0
replies
823
views
DotPlot error in Seurat
Seurat single-cell
updated 21 months ago by 45k • written 21 months ago by ▴ 120
12
votes
2
replies
8.1k
views
Picking optimal resolution for single cell in seurat pipeline
single-cell
updated 21 months ago by 45k • written 21 months ago by ▴ 120
3
votes
2
replies
1.0k
views
Feature plot not applicable for RunTSNE object in seurat?
harmony Seurat single-cell
21 months ago by synat.keam ▴ 120
1
vote
3
replies
1.2k
views
comparision of umap single cell
single-cell
21 months ago by synat.keam ▴ 120
3
votes
4
replies
1.4k
views
Generate a fraction of immune cell between two condition from single cell RNAseq
single-cell
22 months ago by synat.keam ▴ 120
3
votes
2
replies
755
views
Automatic Cluster Annotation to the subsets of immune cells
single-cell
updated 7 months ago by • 0 • written 22 months ago by ▴ 120
3
votes
1
reply
966
views
Overlapping cluster/annotation
Single-Cell
updated 22 months ago by 5.0k • written 22 months ago by ▴ 120
0
votes
1
reply
908
views
Drawing label around clusters
cells Single
updated 22 months ago by ★ 29k • written 22 months ago by ▴ 120
3
votes
2
replies
2.1k
views
Could not view/find meta.data and Error merging three seurat object
Seurat single-cell
updated 22 months ago by 45k • written 22 months ago by ▴ 120
6
votes
6
replies
1.8k
views
Integration in single cell RNAseq: What does it mean?
Single cell
updated 22 months ago by ▴ 360 • written 22 months ago by ▴ 120
8
votes
2
replies
1.3k
views
Bulk and Single cell TCRSeq analysis
TCRSeq
updated 23 months ago by ★ 4.7k • written 23 months ago by ▴ 120
0
votes
0
replies
483
views
Multi-sample integration analysis of flow cytometry in R
Cytometry R Flow
2.3 years ago by synat.keam ▴ 120
1
vote
1
reply
1.3k
views
Filter top differentially experssed for pheatmap from DESeq2
DESeq2 pheatmap
updated 2.9 years ago by 88k • written 2.9 years ago by ▴ 120
1
vote
2
replies
853
views
Ordering row with high expression at the top rather than the bottom
pheatmap
2.9 years ago by synat.keam ▴ 120
3
votes
4
replies
2.1k
views
PlotPCA shows small plot in plot section of R studio
DESeq2 PlotPCA
2.9 years ago by synat.keam ▴ 120
0
votes
2
replies
1.5k
views
Time course RNA seq with DESEq2
DESeq2
2.9 years ago by synat.keam ▴ 120
0
votes
2
replies
1.0k
views
Pipeline with HISAT bulk RNA seq alignment
HISTA
2.9 years ago by synat.keam ▴ 120
6
votes
4
replies
1.6k
views
Reference genome fasta file
genome Reference
2.9 years ago by synat.keam ▴ 120
0
votes
2
replies
1.1k
views
Single cell
SingleCell
3.4 years ago by synat.keam ▴ 120
0
votes
1
reply
1.3k
views
Understanding how to get enrichment score in GSEA software from broad institute
GSEA
updated 11 months ago by ★ 4.4k • written 3.5 years ago by ▴ 120
3
votes
4
replies
2.3k
views
Filter out genes less than 10 count from DESeq2 does not work
DESeq2
3.5 years ago by synat.keam ▴ 120
5
votes
4
replies
1.6k
views
Hide column label of genes
geneexpression
3.6 years ago by synat.keam ▴ 120
0
votes
0
replies
808
views
How to read WGCNA edge file output to find the hub genes_ GO ontology
WGCNA hubgene
3.6 years ago by synat.keam ▴ 120
3
votes
4
replies
4.9k
views
Treeplot
ClusterProfiler
3.6 years ago by synat.keam ▴ 120
0
votes
6
replies
3.8k
views
Entrez Gene ID
EntrezID ontology GO ClusterProfiler
3.6 years ago by synat.keam ▴ 120
3
votes
4
replies
1.6k
views
Filtering Gene by mean expression
Gene meanExpression Filter
updated 3.7 years ago by ▴ 810 • written 3.7 years ago by ▴ 120
4
votes
3
replies
2.5k
views
filtering most variable genes
RNAseq
updated 3.7 years ago by 15k • written 3.7 years ago by ▴ 120
0
votes
0
replies
721
views
Finding whether WGCNA module is associated with different categorical treatment conditions
WGCNA
3.7 years ago by synat.keam ▴ 120
3
votes
4
replies
1.6k
views
Weird WGCNA plot
WGCNA
3.7 years ago by synat.keam ▴ 120
54 results • Page 1 of 2
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