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0
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0
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101
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monocle 3-- Could not get node in small cluster
monocle3
9 days ago by synat.keam ▴ 100
0
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0
replies
174
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how to read graph_test output of monocle 3
monocle3
21 days ago by synat.keam ▴ 100
0
votes
0
replies
214
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
29 days ago by synat.keam ▴ 100
2
votes
4
replies
336
views
Addmetadata to seurat obj
seurat
5 weeks ago by synat.keam ▴ 100
0
votes
1
reply
213
views
How plot multiple enrichment plot together
singlecell
updated 6 weeks ago by ★ 2.0k • written 6 weeks ago by ▴ 100
3
votes
2
replies
626
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Fail to install umap-learn in R
cellchat R
updated 6 weeks ago by 43k • written 11 weeks ago by ▴ 100
0
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0
replies
150
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Differentially expressed genes across condition
singlecell
9 weeks ago by synat.keam ▴ 100
0
votes
2
replies
743
views
Filter out doublet and Clustering
single-cell
updated 10 weeks ago by ★ 1.8k • written 6 months ago by ▴ 100
2
votes
2
replies
245
views
Sample clustering from 10X single cell
clustering
12 weeks ago by synat.keam ▴ 100
8
votes
7
replies
597
views
adjusting parameters in ViolinPlot did not work
single-cell
updated 3 months ago by 43k • written 3 months ago by ▴ 100
0
votes
0
replies
273
views
Seurat Figure legend
single cell
3 months ago by synat.keam ▴ 100
14
votes
10
replies
1.0k
views
How to remove center population from seurat cluster
single-cell
5 months ago by synat.keam ▴ 100
5
votes
3
replies
702
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Rstudio cloud
R single-cell
5 months ago by synat.keam ▴ 100
3
votes
2
replies
904
views
Should I scale all genes in single cell Seurat?
singlecell
5 months ago by synat.keam ▴ 100
2
votes
2
replies
2.6k
views
Cellcyclescoring did not work in Seurat V5
singlecell
updated 5 months ago by ★ 1.6k • written 5 months ago by ▴ 100
11
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6
replies
1.2k
views
6 follow
UMAP or TSNE for single cells?
single-cell
updated 5 months ago by ▴ 40 • written 6 months ago by ▴ 100
3
votes
2
replies
803
views
Running for loop for resolution of Seurat got error: Error: Not an S4 object.
R single seurat cell
updated 6 months ago by 11k • written 6 months ago by ▴ 100
0
votes
3
replies
493
views
Reproducible seurat clustering
seurat clustering single-cell
updated 6 months ago by 43k • written 6 months ago by ▴ 100
4
votes
2
replies
753
views
Annoate complex heatmap columns
complexheatmap
updated 6 months ago by 43k • written 6 months ago by ▴ 100
3
votes
6
replies
1.1k
views
Cluster annotation in single cell
Single-cell
updated 7 months ago by ▴ 210 • written 8 months ago by ▴ 100
0
votes
0
replies
391
views
DotPlot error in Seurat
Seurat single-cell
updated 7 months ago by 43k • written 7 months ago by ▴ 100
6
votes
2
replies
1.7k
views
Picking optimal resolution for single cell in seurat pipeline
single-cell
updated 7 months ago by 43k • written 7 months ago by ▴ 100
3
votes
2
replies
510
views
Feature plot not applicable for RunTSNE object in seurat?
harmony Seurat single-cell
7 months ago by synat.keam ▴ 100
1
vote
3
replies
575
views
comparision of umap single cell
single-cell
7 months ago by synat.keam ▴ 100
3
votes
4
replies
738
views
Generate a fraction of immune cell between two condition from single cell RNAseq
single-cell
8 months ago by synat.keam ▴ 100
3
votes
1
reply
417
views
Automatic Cluster Annotation to the subsets of immune cells
single-cell
updated 5 months ago by 43k • written 8 months ago by ▴ 100
3
votes
1
reply
563
views
Overlapping cluster/annotation
Single-Cell
updated 8 months ago by 3.9k • written 8 months ago by ▴ 100
0
votes
1
reply
405
views
Drawing label around clusters
cells Single
updated 8 months ago by ★ 27k • written 8 months ago by ▴ 100
3
votes
2
replies
1.0k
views
Could not view/find meta.data and Error merging three seurat object
Seurat single-cell
updated 8 months ago by 43k • written 8 months ago by ▴ 100
6
votes
6
replies
890
views
Integration in single cell RNAseq: What does it mean?
Single cell
updated 8 months ago by ▴ 280 • written 8 months ago by ▴ 100
8
votes
2
replies
686
views
Bulk and Single cell TCRSeq analysis
TCRSeq
updated 8 months ago by ★ 3.9k • written 8 months ago by ▴ 100
0
votes
0
replies
333
views
Multi-sample integration analysis of flow cytometry in R
Cytometry R Flow
13 months ago by synat.keam ▴ 100
1
vote
1
reply
933
views
Filter top differentially experssed for pheatmap from DESeq2
DESeq2 pheatmap
updated 20 months ago by 82k • written 20 months ago by ▴ 100
1
vote
2
replies
536
views
Ordering row with high expression at the top rather than the bottom
pheatmap
21 months ago by synat.keam ▴ 100
3
votes
4
replies
1.4k
views
PlotPCA shows small plot in plot section of R studio
DESeq2 PlotPCA
20 months ago by synat.keam ▴ 100
0
votes
2
replies
1.1k
views
Time course RNA seq with DESEq2
DESeq2
21 months ago by synat.keam ▴ 100
0
votes
2
replies
632
views
Pipeline with HISAT bulk RNA seq alignment
HISTA
21 months ago by synat.keam ▴ 100
6
votes
4
replies
1.1k
views
Reference genome fasta file
genome Reference
21 months ago by synat.keam ▴ 100
0
votes
2
replies
749
views
Single cell
SingleCell
2.2 years ago by synat.keam ▴ 100
0
votes
0
replies
710
views
Understanding how to get enrichment score in GSEA software from broad institute
GSEA
24 months ago by synat.keam ▴ 100
3
votes
4
replies
1.5k
views
Filter out genes less than 10 count from DESeq2 does not work
DESeq2
2.3 years ago by synat.keam ▴ 100
5
votes
4
replies
1.0k
views
Hide column label of genes
geneexpression
2.4 years ago by synat.keam ▴ 100
0
votes
0
replies
629
views
How to read WGCNA edge file output to find the hub genes_ GO ontology
WGCNA hubgene
2.5 years ago by synat.keam ▴ 100
3
votes
4
replies
3.7k
views
Treeplot
ClusterProfiler
2.5 years ago by synat.keam ▴ 100
0
votes
6
replies
2.8k
views
Entrez Gene ID
EntrezID ontology GO ClusterProfiler
2.5 years ago by synat.keam ▴ 100
3
votes
4
replies
1.2k
views
Filtering Gene by mean expression
Gene meanExpression Filter
updated 2.5 years ago by ▴ 790 • written 2.5 years ago by ▴ 100
4
votes
3
replies
1.7k
views
filtering most variable genes
RNAseq
updated 2.5 years ago by 14k • written 2.5 years ago by ▴ 100
0
votes
0
replies
548
views
Finding whether WGCNA module is associated with different categorical treatment conditions
WGCNA
2.5 years ago by synat.keam ▴ 100
3
votes
4
replies
1.1k
views
Weird WGCNA plot
WGCNA
2.5 years ago by synat.keam ▴ 100
0
votes
0
replies
548
views
Estimating the level of cytokine and chemokine from BulkRNAseq count matrix
Cytokine RNAseq chemokines
2.6 years ago by synat.keam ▴ 100
53 results • Page 1 of 2
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