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How can I get raw CPTAC protein quantification data ?
CPTAC proteomics proteins python transcriptome
8 weeks ago by AlexStar ▴ 170
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436
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Comment: Comment: Understanding how to deal with Brain snRNA-seq data
9 weeks ago by AlexStar ▴ 170
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3
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436
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Understanding how to deal with Brain snRNA-seq data
scanpy python single-cell anndata RNA
updated 9 weeks ago by ★ 4.6k • written 9 weeks ago by ▴ 170
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1
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739
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Comment: Comment: snRNA-seq of the healthy human brain
3 months ago by AlexStar ▴ 170
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739
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Comment: Comment: snRNA-seq of the healthy human brain
3 months ago by AlexStar ▴ 170
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5
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739
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snRNA-seq of the healthy human brain
python scanpy anndata single-cell
updated 3 months ago by 4.9k • written 3 months ago by ▴ 170
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2
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555
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Comment: Comment: Ontology for column naming in RNA-seq data
3 months ago by AlexStar ▴ 170
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4
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555
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Ontology for column naming in RNA-seq data
python scanpy anndata single-cell
updated 3 months ago by 150k • written 3 months ago by ▴ 170
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465
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Comment: Comment: Help with finding scRNA-seq data
4 months ago by AlexStar ▴ 170
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2
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465
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Help with finding scRNA-seq data
10x scanpy python single-cell anndata
4 months ago by AlexStar ▴ 170
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0
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845
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Comment: Comment: Using Tumor Immune Dysfunction and Exclusion (TIDE)
4 months ago by AlexStar ▴ 170
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2
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845
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Using Tumor Immune Dysfunction and Exclusion (TIDE)
TPM cancer r
4 months ago by AlexStar ▴ 170
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1
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482
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What is the reason that all high throughput sequencing data for the human brain is snRNA-seq instead of scRNA-seq ?
10x scanpy python single-cell anndata
updated 4 months ago by ★ 18k • written 4 months ago by ▴ 170
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1
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315
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What are the epithelial cells subtype in esophagus tissue ?
python scanpy anndata single-cell
updated 5 months ago by 87k • written 5 months ago by ▴ 170
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1
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988
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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
8 months ago by AlexStar ▴ 170
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988
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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
8 months ago by AlexStar ▴ 170
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1
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988
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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
8 months ago by AlexStar ▴ 170
1
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7
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988
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How do decide if a processed scRNA-seq data is read counts or UMI format ?
scanpy python single-cell anndata RNA
updated 8 months ago by 87k • written 8 months ago by ▴ 170
2
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6
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957
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Finding scRNA-seq datasets of healthy human ovaries
python GEO single-cell RNA
updated 9 months ago by 45k • written 9 months ago by ▴ 170
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0
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957
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Comment: Comment: Finding scRNA-seq datasets of healthy human ovaries
9 months ago by AlexStar ▴ 170
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0
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957
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Comment: Comment: Finding scRNA-seq datasets of healthy human ovaries
9 months ago by AlexStar ▴ 170
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1
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957
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Comment: Comment: Finding scRNA-seq datasets of healthy human ovaries
9 months ago by AlexStar ▴ 170
1
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1
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903
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Reading files from different types as H5AD
python scanpy anndata single-cell
updated 9 months ago by ★ 3.0k • written 9 months ago by ▴ 170
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1
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1.8k
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Comment: Comment: Applying the metacell2 algorithm using python
10 months ago by AlexStar ▴ 170
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0
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287
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Empty kernel in SEACells model
single-cell scanpy seacells python anndata
10 months ago by AlexStar ▴ 170
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1
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1.8k
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Comment: Comment: Applying the metacell2 algorithm using python
10 months ago by AlexStar ▴ 170
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9
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1.8k
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Applying the metacell2 algorithm using python
python single-cell scanpy metacell2
updated 10 months ago by ★ 2.1k • written 10 months ago by ▴ 170
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0
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1.8k
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Comment: Comment: Applying the metacell2 algorithm using python
10 months ago by AlexStar ▴ 170
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1
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1.8k
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Comment: Comment: Applying the metacell2 algorithm using python
10 months ago by AlexStar ▴ 170
12
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7
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7.1k
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6 follow
Convert FPKM to TPM in R
r TPM normalization meta-analysis
updated 13 months ago by 45k • written 2.5 years ago by ▴ 170
4
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10
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1.8k
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6 follow
Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
GEO RNA-seq
updated 14 months ago by 45k • written 14 months ago by ▴ 170
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1
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1.8k
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Comment: Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
14 months ago by AlexStar ▴ 170
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0
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1.8k
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Comment: Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
14 months ago by AlexStar ▴ 170
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5
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1.3k
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Log2 transformation is well used, but is there a good paper that can be used as reference ?
TPM log2-transformation r
updated 14 months ago by 89k • written 14 months ago by ▴ 170
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2
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655
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What type of cancer did they study in this paper?
cancer RNAseq single-cell
updated 16 months ago by 150k • written 16 months ago by ▴ 170
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1
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807
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Comment: Comment: Discrepancies Between GEO Page and its article - Seeking Clarification
17 months ago by AlexStar ▴ 170
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3
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807
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Discrepancies Between GEO Page and its article - Seeking Clarification
cancer GEO RNA-seq
updated 17 months ago by 45k • written 17 months ago by ▴ 170
1
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1
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7.4k
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Comment: Comment: Code for reading h5ad files in R
17 months ago by AlexStar ▴ 170
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1
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7.4k
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Comment: Comment: Code for reading h5ad files in R
17 months ago by AlexStar ▴ 170
1
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5
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7.4k
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Code for reading h5ad files in R
r RNA-seq single-cell
updated 17 months ago by ★ 1.7k • written 17 months ago by ▴ 170
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1
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1.4k
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Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
19 months ago by AlexStar ▴ 170
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1
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1.4k
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Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
19 months ago by AlexStar ▴ 170
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0
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1.4k
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Comment: Comment: Understaning the result of Meta-analysis of differential expression across datas
19 months ago by AlexStar ▴ 170
0
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8
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1.4k
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Understaning the result of Meta-analysis of differential expression across datasets
r differential-expression genes
updated 19 months ago by 21k • written 19 months ago by ▴ 170
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0
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1.6k
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Comment: Comment: Performing differential expression analysis after applying transformations on my
19 months ago by AlexStar ▴ 170
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1
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1.6k
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Comment: Comment: Performing differential expression analysis after applying transformations on my
19 months ago by AlexStar ▴ 170
0
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1
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1.6k
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Comment: Comment: Performing differential expression analysis after applying transformations on my
19 months ago by AlexStar ▴ 170
0
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1
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1.6k
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Comment: Comment: Performing differential expression analysis after applying transformations on my
19 months ago by AlexStar ▴ 170
0
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1
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782
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Remove batch effects on the train set to avoid information leakage
r limma batch-effect
updated 19 months ago by 45k • written 19 months ago by ▴ 170
0
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11
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1.6k
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Performing differential expression analysis after applying transformations on my data
normalization differential-expression r
19 months ago by AlexStar ▴ 170
148 results • Page 1 of 3
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