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cutpointr package in R for finding the optimal cut of a predictive model
r ROC machine caret learning
18 months ago by JACKY ▴ 140
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Comment: Comment: Is it adviced to remove genes with very low expression in TPM data?
18 months ago by JACKY ▴ 140
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1.8k
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Comment: Comment: Is it adviced to remove genes with very low expression in TPM data?
19 months ago by JACKY ▴ 140
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5
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1.8k
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Is it adviced to remove genes with very low expression in TPM data?
r TPM RNA-seq clean
updated 18 months ago by 4.2k • written 19 months ago by ▴ 140
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1
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570
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How to calculate the effictive gene length in R?
r TPM normalization
19 months ago by JACKY ▴ 140
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2
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3.0k
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Error in bmRequest(request = request, httr_config = httr_config, verbose = verbose) : Gateway Timeout (HTTP 504).
r ensemble biomart
updated 19 months ago by ★ 2.0k • written 19 months ago by ▴ 140
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2.0k
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Comment: Comment: Understanding log2 transformation for TPM
19 months ago by JACKY ▴ 140
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3
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2.0k
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Understanding log2 transformation for TPM
r transformation TPM log2
updated 19 months ago by ★ 1.2k • written 19 months ago by ▴ 140
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891
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Comment: Comment: Batch effect correction with cell type enrichment analysis
19 months ago by JACKY ▴ 140
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4.2k
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Comment: Comment: Convert FPKM to TPM in R
19 months ago by JACKY ▴ 140
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1
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891
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Comment: Comment: Batch effect correction with cell type enrichment analysis
19 months ago by JACKY ▴ 140
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1
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1.3k
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argument ".f" is missing, with no default
r exons genes
updated 19 months ago by 13k • written 19 months ago by ▴ 140
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6
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891
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Batch effect correction with cell type enrichment analysis
limma RNA-seq r batch-effect
updated 4 weeks ago by 43k • written 19 months ago by ▴ 140
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2.7k
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Comment: Comment: The best way to get gene lengths for 15K+ genes?
19 months ago by JACKY ▴ 140
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1
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2.7k
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Comment: Comment: The best way to get gene lengths for 15K+ genes?
20 months ago by JACKY ▴ 140
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1
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2.7k
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Comment: Comment: The best way to get gene lengths for 15K+ genes?
20 months ago by JACKY ▴ 140
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1
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2.7k
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Comment: Comment: The best way to get gene lengths for 15K+ genes?
20 months ago by JACKY ▴ 140
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1
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2.7k
views
Comment: Comment: The best way to get gene lengths for 15K+ genes?
20 months ago by JACKY ▴ 140
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537
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Comment: Comment: Comparing gene expression between two groups, using boxplots
20 months ago by JACKY ▴ 140
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1
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537
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Comparing gene expression between two groups, using boxplots
r DEG TPM boxplot
20 months ago by JACKY ▴ 140
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1
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592
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Comment: Comment: TPM normalization result
20 months ago by JACKY ▴ 140
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3
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592
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TPM normalization result
normalization r TPM
updated 20 months ago by 3.9k • written 20 months ago by ▴ 140
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2.7k
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Comment: Comment: The best way to get gene lengths for 15K+ genes?
21 months ago by JACKY ▴ 140
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12
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2.7k
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The best way to get gene lengths for 15K+ genes?
r EDAseq RNA-seq
19 months ago by JACKY ▴ 140
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2.0k
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Comment: Comment: Warning - longer object length is not a multiple of shorter object length
21 months ago by JACKY ▴ 140
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2.0k
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Comment: Comment: Warning - longer object length is not a multiple of shorter object length
21 months ago by JACKY ▴ 140
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7
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2.0k
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Warning - longer object length is not a multiple of shorter object length
genelength r TPM RNA-seq
updated 21 months ago by ★ 7.2k • written 21 months ago by ▴ 140
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374
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What does batch effect correction mean?
effects batch r data limma
22 months ago by JACKY ▴ 140
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0
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770
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Comment: Comment: Searching for RNA-seq melanoma samples in TCGA or cBioPortal
23 months ago by JACKY ▴ 140
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762
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Comment: Comment: Error with TCGA package - TCGAbiolinks
23 months ago by JACKY ▴ 140
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2
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762
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Error with TCGA package - TCGAbiolinks
TCGA r cancer
23 months ago by JACKY ▴ 140
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6
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2.0k
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ESTIMATE tumor purity
purity r cancer
23 months ago by JACKY ▴ 140
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2.0k
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Answer: Answer: ESTIMATE tumor purity
23 months ago by JACKY ▴ 140
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3
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770
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Searching for RNA-seq melanoma samples in TCGA or cBioPortal
TCGA r cBioPortal cancer
updated 22 months ago by ▴ 120 • written 23 months ago by ▴ 140
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2.0k
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Comment: Comment: ESTIMATE tumor purity
23 months ago by JACKY ▴ 140
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2.0k
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Comment: Comment: ESTIMATE tumor purity
23 months ago by JACKY ▴ 140
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1
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2.0k
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Comment: Comment: ESTIMATE tumor purity
23 months ago by JACKY ▴ 140
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1
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520
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From counts to TPM code verification
TPM normalization r
updated 23 months ago by 82k • written 23 months ago by ▴ 140
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1
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1.3k
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Comment: Comment: A check over my code using Limma DE, starting from normalized data
24 months ago by JACKY ▴ 140
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0
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1.3k
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Comment: Comment: A check over my code using Limma DE, starting from normalized data
24 months ago by JACKY ▴ 140
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2
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1.3k
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Comment: Comment: A check over my code using Limma DE, starting from normalized data
24 months ago by JACKY ▴ 140
0
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7
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1.3k
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A check over my code using Limma DE, starting from normalized data
limma r
updated 19 months ago by ★ 7.2k • written 24 months ago by ▴ 140
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1
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1.1k
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Comment: Comment: Cellular deconvolution does not work without batch effect correction
2.1 years ago by JACKY ▴ 140
1
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4
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1.1k
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Cellular deconvolution does not work without batch effect correction
batch effect r deconvolution
updated 2.1 years ago by 82k • written 2.2 years ago by ▴ 140
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1
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1.1k
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Comment: Comment: Error: Application depends on package "rlang" but it is not installed
2.2 years ago by JACKY ▴ 140
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3
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1.1k
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Error: Application depends on package "rlang" but it is not installed
shiny R
updated 2.2 years ago by 27k • written 2.2 years ago by ▴ 140
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340
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How to check if genes are important in cancer, using depmap or cBioPortal?
cBioPortal r depmap
2.2 years ago by JACKY ▴ 140
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539
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Comment: Comment: associate EBV to cancer
2.2 years ago by JACKY ▴ 140
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0
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760
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Comment: Comment: low counts in DESeq2
2.2 years ago by JACKY ▴ 140
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2
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539
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associate EBV to cancer
EBV r depmap
2.2 years ago by JACKY ▴ 140
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