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Comment: Comment: Performing differential expression analysis after applying transformations on my
19 months ago by AlexStar ▴ 170
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1
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971
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How to tune and use the MetaVolcanoR
limma Bioconductor r MetaVolcanoR
updated 20 months ago by ★ 2.0k • written 2.6 years ago by ▴ 170
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1.5k
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Comment: Comment: TPM normalization but library size isn't equal to 1 million
21 months ago by AlexStar ▴ 170
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4
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1.5k
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TPM normalization but library size isn't equal to 1 million
normalization TPM cancer r
updated 21 months ago by ★ 7.3k • written 21 months ago by ▴ 170
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1
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1.1k
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Comment: Comment: Using IMmuno-PREdictive Score (IMPRES)
21 months ago by AlexStar ▴ 170
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1.1k
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Comment: Comment: Using IMmuno-PREdictive Score (IMPRES)
21 months ago by AlexStar ▴ 170
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5
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1.1k
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Using IMmuno-PREdictive Score (IMPRES)
scaling TPM cancer normalization r
updated 21 months ago by 45k • written 21 months ago by ▴ 170
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1.1k
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Filtering genes after TPM normalization
filtering normalization TPM r
updated 21 months ago by ▴ 250 • written 21 months ago by ▴ 170
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1.1k
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Comment: Comment: What does "OS_CNSR" and "PFS_CNSR" mean?
21 months ago by AlexStar ▴ 170
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2
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1.1k
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What does "OS_CNSR" and "PFS_CNSR" mean?
survival cancer r
21 months ago by AlexStar ▴ 170
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3
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1.6k
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What is the best way to clean bulk RNA-seq data?
normalization TPM r
updated 21 months ago by ★ 1.4k • written 22 months ago by ▴ 170
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1
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985
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Comment: Comment: What type of normalization did they use in this article?
22 months ago by AlexStar ▴ 170
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3
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985
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What type of normalization did they use in this article?
normalization TPM r
updated 22 months ago by 45k • written 22 months ago by ▴ 170
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1.5k
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Comment: Comment: Is there anyway to cancel CPM normalization?
22 months ago by AlexStar ▴ 170
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1
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1.5k
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Comment: Comment: Is there anyway to cancel CPM normalization?
23 months ago by AlexStar ▴ 170
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5
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1.5k
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Is there anyway to cancel CPM normalization?
r TPM normalization
updated 22 months ago by 14k • written 23 months ago by ▴ 170
2
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1
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1.3k
views
Timeout error using Biomart to get gene lengths
r biomart
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 170
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1
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596
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How to identify which are the the pre therapy samples?
data RNA-seq
updated 2.1 years ago by ★ 2.0k • written 2.1 years ago by ▴ 170
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2
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740
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Where can I get the ICB datasets in this website?
data r ICB
updated 2.1 years ago by 150k • written 2.1 years ago by ▴ 170
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1
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1.2k
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Comment: Comment: Check what are the columns that are enriched in each t-SNE cluster
2.2 years ago by AlexStar ▴ 170
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1
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1.2k
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Comment: Comment: Check what are the columns that are enriched in each t-SNE cluster
2.2 years ago by AlexStar ▴ 170
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5
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1.2k
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Check what are the columns that are enriched in each t-SNE cluster
r Dimensionality-reduction MachineLearning Rtsne
updated 2.2 years ago by ★ 29k • written 2.2 years ago by ▴ 170
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0
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668
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cutpointr package in R for finding the optimal cut of a predictive model
r ROC machine caret learning
2.3 years ago by AlexStar ▴ 170
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0
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2.4k
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Comment: Comment: Is it adviced to remove genes with very low expression in TPM data?
2.4 years ago by AlexStar ▴ 170
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1
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2.4k
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Comment: Comment: Is it adviced to remove genes with very low expression in TPM data?
2.4 years ago by AlexStar ▴ 170
1
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5
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2.4k
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Is it adviced to remove genes with very low expression in TPM data?
r TPM RNA-seq clean
updated 2.4 years ago by 4.6k • written 2.4 years ago by ▴ 170
3
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1
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901
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How to calculate the effictive gene length in R?
r TPM normalization
2.4 years ago by AlexStar ▴ 170
1
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2
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4.0k
views
Error in bmRequest(request = request, httr_config = httr_config, verbose = verbose) : Gateway Timeout (HTTP 504).
r ensemble biomart
updated 2.4 years ago by ★ 2.1k • written 2.4 years ago by ▴ 170
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1
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3.0k
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Comment: Comment: Understanding log2 transformation for TPM
2.5 years ago by AlexStar ▴ 170
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3
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3.0k
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Understanding log2 transformation for TPM
r transformation TPM log2
updated 2.4 years ago by ★ 1.2k • written 2.5 years ago by ▴ 170
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1
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1.3k
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Comment: Comment: Batch effect correction with cell type enrichment analysis
2.5 years ago by AlexStar ▴ 170
3
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0
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7.1k
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Comment: Comment: Convert FPKM to TPM in R
2.5 years ago by AlexStar ▴ 170
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1
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1.3k
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Comment: Comment: Batch effect correction with cell type enrichment analysis
2.5 years ago by AlexStar ▴ 170
5
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1
reply
1.8k
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argument ".f" is missing, with no default
r exons genes
updated 2.5 years ago by 13k • written 2.5 years ago by ▴ 170
2
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6
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1.3k
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Batch effect correction with cell type enrichment analysis
limma RNA-seq r batch-effect
updated 11 months ago by 45k • written 2.5 years ago by ▴ 170
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0
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3.9k
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Comment: Comment: The best way to get gene lengths for 15K+ genes?
2.5 years ago by AlexStar ▴ 170
0
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1
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3.9k
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Comment: Comment: The best way to get gene lengths for 15K+ genes?
2.5 years ago by AlexStar ▴ 170
0
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1
reply
3.9k
views
Comment: Comment: The best way to get gene lengths for 15K+ genes?
2.5 years ago by AlexStar ▴ 170
0
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1
reply
3.9k
views
Comment: Comment: The best way to get gene lengths for 15K+ genes?
2.5 years ago by AlexStar ▴ 170
0
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1
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3.9k
views
Comment: Comment: The best way to get gene lengths for 15K+ genes?
2.5 years ago by AlexStar ▴ 170
0
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0
replies
776
views
Comment: Comment: Comparing gene expression between two groups, using boxplots
2.6 years ago by AlexStar ▴ 170
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1
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776
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Comparing gene expression between two groups, using boxplots
r DEG TPM boxplot
2.6 years ago by AlexStar ▴ 170
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1
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770
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Comment: Comment: TPM normalization result
2.6 years ago by AlexStar ▴ 170
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3
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770
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TPM normalization result
normalization r TPM
updated 2.6 years ago by 4.9k • written 2.6 years ago by ▴ 170
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0
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3.9k
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Comment: Comment: The best way to get gene lengths for 15K+ genes?
2.6 years ago by AlexStar ▴ 170
2
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12
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3.9k
views
The best way to get gene lengths for 15K+ genes?
r EDAseq RNA-seq
2.5 years ago by AlexStar ▴ 170
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0
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2.7k
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Comment: Comment: Warning - longer object length is not a multiple of shorter object length
2.6 years ago by AlexStar ▴ 170
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1
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2.7k
views
Comment: Comment: Warning - longer object length is not a multiple of shorter object length
2.6 years ago by AlexStar ▴ 170
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7
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2.7k
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Warning - longer object length is not a multiple of shorter object length
genelength r TPM RNA-seq
updated 2.6 years ago by ★ 7.8k • written 2.6 years ago by ▴ 170
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0
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511
views
What does batch effect correction mean?
effects batch r data limma
2.7 years ago by AlexStar ▴ 170
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