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Compare gene expression between scRNAseq and bulk RNAseq data
scRNAseq RNAseq
2.7 years ago by grayapply2009 ▴ 290
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1.3k
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Comment: Comment: Extremely high adapter content and low alignment rate in RNAseq
2.9 years ago by grayapply2009 ▴ 290
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3
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1.3k
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Extremely high adapter content and low alignment rate in RNAseq
alignment adapter RNAseq
updated 2.9 years ago by 14k • written 2.9 years ago by ▴ 290
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1.9k
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Comment: Comment: Most of the top marker genes identified by FindConservativeMarkers (seurat) have
3.1 years ago by grayapply2009 ▴ 290
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5
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1.9k
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Most of the top marker genes identified by FindConservativeMarkers (seurat) have negative logFC.
findconservativemarkers single seurat marker cell
updated 3.1 years ago by ★ 17k • written 3.1 years ago by ▴ 290
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1.9k
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Comment: Comment: Most of the top marker genes identified by findconservativemarkers (seurat) have
3.1 years ago by grayapply2009 ▴ 290
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8.6k
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Comment: C: How to make a complicated dot plot for scRNAseq marker genes with ggplot2?
3.4 years ago by grayapply2009 ▴ 290
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1
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8.6k
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Comment: C: How to make a complicated dot plot for scRNAseq marker genes with ggplot2?
3.4 years ago by grayapply2009 ▴ 290
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2
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8.6k
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Comment: C: How to make a complicated dot plot for scRNAseq marker genes with ggplot2?
3.4 years ago by grayapply2009 ▴ 290
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8.6k
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Comment: C: How to make a complicated dot plot for scRNAseq marker genes with ggplot2?
3.4 years ago by grayapply2009 ▴ 290
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15
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8.6k
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6 follow
How to make a complicated dot plot for scRNAseq marker genes with ggplot2?
single cell RNAseq ggplot2 RNA-Seq R
updated 4 months ago by ▴ 30 • written 3.4 years ago by ▴ 290
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8.6k
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Comment: C: How to make a complicated dot plot for scRNAseq marker genes with ggplot2?
3.4 years ago by grayapply2009 ▴ 290
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2.3k
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Comment: C: DE analysis with limma (What to include in the model?)
3.9 years ago by grayapply2009 ▴ 290
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1
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2.3k
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Comment: C: DE analysis with limma (What to include in the model?)
3.9 years ago by grayapply2009 ▴ 290
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1
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2.3k
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Comment: C: DE analysis with limma (What to include in the model?)
3.9 years ago by grayapply2009 ▴ 290
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1
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2.3k
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Comment: C: DE analysis with limma (What to include in the model?)
3.9 years ago by grayapply2009 ▴ 290
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14
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2.3k
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DE analysis with limma (What to include in the model?)
DE analysis limma Differential Expression
3.9 years ago by grayapply2009 ▴ 290
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1
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2.3k
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Comment: C: DE analysis with limma (What to include in the model?)
3.9 years ago by grayapply2009 ▴ 290
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3
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2.0k
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Strange Mean-Variance plot after Voom Normalization (RNAseq)
RNA-Seq Normalizaton Voom Limma
updated 3.9 years ago by 20 • written 3.9 years ago by ▴ 290
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1
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2.0k
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Comment: C: Strange Mean-Variance plot after Voom Normalization (RNAseq)
3.9 years ago by grayapply2009 ▴ 290
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3.9k
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Comment: C: Treatment VS Control in Single Cell RNAseq analysis
4.0 years ago by grayapply2009 ▴ 290
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1
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3.9k
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Comment: C: Treatment VS Control in Single Cell RNAseq analysis
4.0 years ago by grayapply2009 ▴ 290
2
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6
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3.9k
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Treatment VS Control in Single Cell RNAseq analysis
Single Cell RNAseq DE Analysis Treatment Control
updated 7 weeks ago by 83k • written 4.0 years ago by ▴ 290
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0
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3.2k
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Comment: C: How to find the longest common sequence for a cluster of sequences in a fasta fi
updated 4.4 years ago by 44k • written 8.4 years ago by ▴ 290
9
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10
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1.9k
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Why are transcripts of a same gene expressed differently in same samples?
transcript expression RNA-Seq
updated 5.6 years ago by ★ 4.1k • written 6.0 years ago by ▴ 290
4
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7
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7.2k
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What does interproscan add to gene annotation?
RNA-Seq de novo transcriptome annotation
updated 5.9 years ago by ▴ 450 • written 8.9 years ago by ▴ 290
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0
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1.9k
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Comment: C: Why are transcripts of a same gene expressed differently in same samples?
6.0 years ago by grayapply2009 ▴ 290
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1
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1.9k
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Comment: C: Why are transcripts of a same gene expressed differently in same samples?
6.0 years ago by grayapply2009 ▴ 290
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3
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1.9k
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Comment: A: Why are transcripts of a same gene expressed differently in same samples?
6.0 years ago by grayapply2009 ▴ 290
5
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2
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3.7k
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DNA sequence clustering tools
clustering cdhit redundancy tgicl
updated 7.2 years ago by 20 • written 8.1 years ago by ▴ 290
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1
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2.7k
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Comment: C: Sample size too small for ARACNE
7.3 years ago by grayapply2009 ▴ 290
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4
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2.7k
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Sample size too small for ARACNE
ARACNE sample size
updated 7.3 years ago by 20 • written 8.9 years ago by ▴ 290
2
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6
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4.6k
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interproscan5 doesn't work for nucelotide sequences but works for protein sequences??
interproscan
updated 19 months ago by 44k • written 8.9 years ago by ▴ 290
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2
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6.6k
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Comment: C: How to annotate GEO microarray datasets with GEOquery?
7.8 years ago by grayapply2009 ▴ 290
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1
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6.6k
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Comment: C: How to annotate GEO microarray datasets with GEOquery?
7.8 years ago by grayapply2009 ▴ 290
8
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6
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6.6k
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How to annotate GEO microarray datasets with GEOquery?
annotation microarray geo
updated 8 days ago by • 0 • written 7.8 years ago by ▴ 290
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3
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1.3k
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Collapse and average the microarray data
awk microarray average
7.8 years ago by grayapply2009 ▴ 290
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0
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1.9k
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Comment: C: Pooling microarray data
7.8 years ago by grayapply2009 ▴ 290
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1
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1.9k
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Comment: C: Pooling microarray data
7.8 years ago by grayapply2009 ▴ 290
2
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4
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1.9k
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Pooling microarray data
microarray pool
updated 7.8 years ago by 27k • written 7.8 years ago by ▴ 290
12
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14
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5.4k
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Why redundant results from nr database?
blast nr
updated 2.3 years ago by 44k • written 9.5 years ago by ▴ 290
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1
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2.5k
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How to export annotated sequences with gene symbols to a fasta file using blast2go?
blast blast2go GO ID
updated 8.0 years ago by 20 • written 8.2 years ago by ▴ 290
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2.5k
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Comment: C: How to export annotated sequences with gene symbols to a fasta file using blast2
8.2 years ago by grayapply2009 ▴ 290
1
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0
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3.2k
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Answer: A: How to find the longest common sequence for a cluster of sequences in a fasta fi
8.4 years ago by grayapply2009 ▴ 290
3
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5
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3.2k
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How to find the longest common sequence for a cluster of sequences in a fasta file using python?
common fasta phthon longest
8.4 years ago by grayapply2009 ▴ 290
0
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1
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3.2k
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Comment: C: How to find the longest common sequence for a cluster of sequences in a fasta fi
8.4 years ago by grayapply2009 ▴ 290
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0
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2.7k
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Comment: C: How to query nr database using a list of GI numbers to get xml files?
8.4 years ago by grayapply2009 ▴ 290
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0
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2.7k
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Comment: C: How to query nr database using a list of GI numbers to get xml files?
8.4 years ago by grayapply2009 ▴ 290
4
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7
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2.7k
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How to query nr database using a list of GI numbers to get xml files?
xml annotation blast gi
updated 23 months ago by 44k • written 8.4 years ago by ▴ 290
0
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1
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2.7k
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Comment: C: How to query nr database using a list of GI numbers to get xml files?
8.4 years ago by grayapply2009 ▴ 290
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