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6
votes
3
replies
7.3k
views
Fasta to axt - KaKs Calculator
bash perl R python KaKs
updated 2.6 years ago by 44k • written 9.2 years ago by ▴ 360
1
vote
0
replies
2.6k
views
Answer: A: Trouble with BioMart Perl API installation
updated 4.6 years ago by 44k • written 8.6 years ago by ▴ 360
2
votes
4
replies
2.6k
views
Trouble with BioMart Perl API installation
perl biomart ensembl api
updated 22 months ago by 44k • written 8.6 years ago by ▴ 360
2
votes
7
replies
4.1k
views
RepeatModeler cannot be run in parallel
RepeatModeler RepeatMasker
updated 5.8 years ago by • 0 • written 7.8 years ago by ▴ 360
0
votes
0
replies
1.6k
views
Comment: C: Get number of available genomes per taxon - NCBI
6.0 years ago by tlorin ▴ 360
2
votes
1
reply
1.6k
views
Answer: A: Get number of available genomes per taxon - NCBI
6.0 years ago by tlorin ▴ 360
4
votes
12
replies
1.6k
views
Get number of available genomes per taxon - NCBI
ncbi genome
6.0 years ago by tlorin ▴ 360
0
votes
1
reply
1.6k
views
Comment: C: Get number of available genomes per taxon - NCBI
6.0 years ago by tlorin ▴ 360
0
votes
0
replies
1.6k
views
Comment: C: Get number of available genomes per taxon - NCBI
6.0 years ago by tlorin ▴ 360
0
votes
1
reply
1.6k
views
Comment: C: Get number of available genomes per taxon - NCBI
6.0 years ago by tlorin ▴ 360
0
votes
1
reply
1.6k
views
Comment: C: Get number of available genomes per taxon - NCBI
6.0 years ago by tlorin ▴ 360
2
votes
4
replies
2.2k
views
Fungi genomes: which database should I use?
fungi genome blast ensembl jgi
updated 6.1 years ago by 20 • written 6.2 years ago by ▴ 360
0
votes
1
reply
2.2k
views
Comment: C: Fungi genomes: which database should I use?
6.2 years ago by tlorin ▴ 360
0
votes
0
replies
2.2k
views
Comment: C: Fungi genomes: which database should I use?
6.2 years ago by tlorin ▴ 360
5
votes
9
replies
12k
views
NCBI blast remote on specific species
ncbi
updated 6.3 years ago by ▴ 300 • written 7.8 years ago by ▴ 360
0
votes
0
replies
8.0k
views
Comment: C: WGCNA with time series data
6.4 years ago by tlorin ▴ 360
0
votes
1
reply
8.0k
views
Comment: C: WGCNA with time series data
6.4 years ago by tlorin ▴ 360
0
votes
0
replies
8.9k
views
Comment: C: filter out fasta File by pattern
6.5 years ago by tlorin ▴ 360
2
votes
8
replies
5.0k
views
Minimal TPM threshold for qPCR measure of gene expression
qpcr RNA-Seq TPM kallisto tximport
6.6 years ago by tlorin ▴ 360
0
votes
1
reply
5.0k
views
Comment: C: Minimal TPM threshold for qPCR measure of gene expression
6.6 years ago by tlorin ▴ 360
0
votes
1
reply
5.0k
views
Comment: C: Minimal TPM threshold for qPCR measure of gene expression
6.6 years ago by tlorin ▴ 360
0
votes
1
reply
5.0k
views
Comment: C: Minimal TPM threshold for qPCR measure of gene expression
6.6 years ago by tlorin ▴ 360
0
votes
1
reply
11k
views
Comment: C: Principal Component Analysis: How many most variable genes should I take?
6.7 years ago by tlorin ▴ 360
14
votes
7
replies
11k
views
Principal Component Analysis: How many most variable genes should I take?
RNA-Seq DESeq2
updated 6.7 years ago by ★ 2.1k • written 6.7 years ago by ▴ 360
0
votes
1
reply
11k
views
Comment: C: Principal Component Analysis: How many most variant genes should I take?
6.7 years ago by tlorin ▴ 360
1
vote
0
replies
8.6k
views
Comment: C: Difference between heatmap using Euclidian distance and Poisson distance
6.7 years ago by tlorin ▴ 360
10
votes
2
replies
8.6k
views
Difference between heatmap using Euclidian distance and Poisson distance
deseq2 RNA-Seq poisson heatmap
updated 6.7 years ago by 88k • written 6.7 years ago by ▴ 360
0
votes
1
reply
4.3k
views
Comment: C: Convert Gene Name to RefSeq ID
6.7 years ago by tlorin ▴ 360
0
votes
0
replies
4.3k
views
Comment: C: Convert Gene Name to RefSeq ID
6.7 years ago by tlorin ▴ 360
0
votes
0
replies
4.3k
views
Comment: C: Convert Gene Name to RefSeq ID
6.7 years ago by tlorin ▴ 360
3
votes
6
replies
4.3k
views
Convert Gene Name to RefSeq ID
RNA-Seq ncbi sequence blast
updated 6.7 years ago by 5.3k • written 6.7 years ago by ▴ 360
0
votes
0
replies
35k
views
Comment: C: Scientific Names In Blast Output And Databases
7.0 years ago by tlorin ▴ 360
0
votes
0
replies
4.5k
views
Comment: C: Cutadapt not trimming adapters in PE mode
7.0 years ago by tlorin ▴ 360
3
votes
4
replies
4.5k
views
Cutadapt not trimming adapters in PE mode
cutadapt RNA-Seq
updated 7.0 years ago by 35k • written 7.0 years ago by ▴ 360
0
votes
1
reply
4.9k
views
Comment: C: Mapping RNA-Seq data on genome from another species
7.1 years ago by tlorin ▴ 360
6
votes
7
replies
4.9k
views
Mapping RNA-Seq data on genome from another species
hisat2 RNA-Seq genome mapping star
updated 7.1 years ago by 20k • written 7.1 years ago by ▴ 360
0
votes
1
reply
4.9k
views
Comment: C: Mapping RNA-Seq data on genome from another species
7.1 years ago by tlorin ▴ 360
1
vote
0
replies
1.6k
views
Comment: C: Fasta to gff with custom set of genes
7.2 years ago by tlorin ▴ 360
2
votes
2
replies
1.6k
views
Fasta to gff with custom set of genes
gff fasta RNA-Seq genome deseq2
updated 7.2 years ago by ★ 3.6k • written 7.2 years ago by ▴ 360
0
votes
0
replies
8.8k
views
Comment: C: Why the local blast and online blast produce different results?
7.5 years ago by tlorin ▴ 360
8
votes
0
replies
28k
views
Answer: A: Tajima's D value interpretation
7.6 years ago by tlorin ▴ 360
2
votes
2
replies
1.6k
views
Merge "NCBI species" data within Ensembl alignment
ensembl ncbi blast phylogeny
updated 7.6 years ago by 20 • written 7.8 years ago by ▴ 360
2
votes
4
replies
1.8k
views
Understanding NCBI identifiers
ncbi id
7.8 years ago by tlorin ▴ 360
0
votes
1
reply
1.8k
views
Comment: C: Understanding NCBI identifiers
7.8 years ago by tlorin ▴ 360
5
votes
3
replies
9.0k
views
Heatmap with categorical variables and with phylogenetic tree in R or Python
python R categorical-data phylogeny heatmap
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 360
0
votes
1
reply
4.1k
views
Comment: C: RepeatModeler cannot be run in parallel
7.8 years ago by tlorin ▴ 360
5
votes
2
replies
4.6k
views
NCBI Blast locally: filter by accession number and NOT by GI number
ncbi
updated 7.8 years ago by 143k • written 7.8 years ago by ▴ 360
0
votes
1
reply
6.0k
views
Comment: C: download protein sequences from NCBI
7.8 years ago by tlorin ▴ 360
5
votes
1
reply
6.0k
views
Answer: A: download protein sequences from NCBI
7.8 years ago by tlorin ▴ 360
0
votes
0
replies
4.6k
views
Comment: C: NCBI Blast locally: filter by accession number and NOT by GI number
7.8 years ago by tlorin ▴ 360
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