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Recent Replies
Answer: how to get an average ROC curve after 10-fold cross validation in r
by
Lisa
•
0
You are right the average numbers are not correct. 0.8831 for cutoff, 0.7726 for specificity and 0.7445 for sensitivity is correct.
what …
Comment: Size of two scRNA-Seq conditions
by
Chris
▴
60
I have QC stat with violin plots n_Feature_RNA, nCount_RNA and percent.mt, not exact numbers. Is that the info we need in this case?
Comment: How to compare different illumina indices with each other to see how similar or
by
jv
▴
790
Are you trying to demultiplex a fastqc file? If so, there are tools for that. Else, what do you mean by 'indices'?
Comment: Mapping with bbmap.sh
by
GenoMax
125k
Those `Notes` are simply indicating that the BBMap index has been pre-created separately and will be used as is.
Comment: Size of two scRNA-Seq conditions
by
Chris
▴
60
Dataset 1 has 19760 cells and dataset 2 has 6705 cells. I am trying to get the code to get the info you want. I am still trying to learn đŸ˜….
Comment: MetaboAnalyst: Interpreting Enrichment Analysis Results
by
eva_u
▴
10
Note: it seems I have confused Q statistic with the Q- value; please disregard the 1st part of the question
Comment: Size of two scRNA-Seq conditions
by
rpolicastro
11k
You need to show the other sample stats I mentioned otherwise I can't provide an answer. Most of those stats are calculated if you follow t…
Comment: Any database on cancer related snp information
by
Ram
37k
Heads up: ClinVar specializes in pathogenic germline mutations and is not a great resource for cancer mutations - not as good as COSMIC at …
Comment: geom_errorbar not dodging or producing horizontal line
by
FrankStarling
▴
20
ggplot(data2, aes(x=Cohort, y=Mean_R2, color = Trait)) +
geom_errorbar(aes(ymin=Mean_R2+SD, ymax=Mean_R2-SD), position="dodge")+
…
Comment: SNP calling
by
dthorbur
▴
260
No idea about the second error, but the first error seems odd to me. What version of GATK are you using? I thought recent versions only emi…
Comment: Size of two scRNA-Seq conditions
by
Chris
▴
60
Thank you so much for your answer! Here is the structure of 2 matrix objects of two conditions. Condition 1 has 19760 cells meanwhile condi…
Answer: Mapping with bbmap.sh
by
Mensur Dlakic
★
22k
Definitely not normal.
It doesn't seem that BBmap is taking any reads in. That's why your `num reads` and `num bases` are all zeros, which…
Comment: how to get an average ROC curve after 10-fold cross validation in r
by
Mensur Dlakic
★
22k
I have no idea what cutoff is in this context, nor what you mean by `original` values.
I don't know how you got those values for means. I …
Comment: Protein protein interactions
by
Mensur Dlakic
★
22k
This is not a trivial calculation nor a simple sequence comparison like with BLAST, so it may take a while. Besides, there could be hundred…
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