updated 27 days ago by
Jeremy Leipzig
22k
•
written 10.5 years ago by
14134125465346445
★
3.6k
103
votes
42
replies
31k
views
34 follow
25
votes
11
replies
3.7k
views
6 follow
Forum:
Site Use Guidelines
updated 12 days ago by
Ram
43k
•
written 14.6 years ago by
Istvan Albert
100k
7
votes
7
replies
1.5k
views
updated 21 days ago by
Dunois
★
2.5k
•
written 21 days ago by
AdviceSeeker
•
0
5
votes
4
replies
377
views
4
votes
2
replies
326
views
1
vote
2
replies
366
views
0
votes
0
replies
179
views
Forum:
Improvement on automatic annotation of single-cell RNA-seq data from the literature using LLM
13 days ago by
yxwucq
•
0
Recent Locations •
All
Brazil, 1 minute ago
United States, 1 minute ago
Iran, 4 minutes ago
Texas, United States, 4 minutes ago
Switzerland, 5 minutes ago
Turkey, 5 minutes ago
Memphis, TN, 5 minutes ago
Recent Awards •
All
Popular Question to
JACKY
▴
140
Popular Question to
bhumm
▴
140
Teacher to
Matthias Zepper
4.6k
Popular Question to
sidrah.maryam
▴
50
Popular Question to
gubrins
▴
290
Popular Question to
arshad1292
▴
100
Recent Replies
Comment: How to access TCGA samples that were treated with a specific drug?
by
Qroid
▴
40
Thank you. Maybe it's best to confirm with the authors about how they're getting responder/non-responder labels. I'll do that now.
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
Chris Dean
▴
390
If you sequenced a short hypervariable region, most of your sequence reads will not be able to be assigned to the species level. One possi…
Comment: anRichment is missing
by
GenoMax
142k
Consider emailing Dr. Horvath about this. Until enough people make him aware of this issue WGCNA "problem" is unlikely to get fixed.
Comment: anRichment is missing
by
Tatyana
•
0
Unfortunately, there are only tutorials and codes for tutorials for WGCNA, not installation files for any their packages... :(
Comment: anRichment is missing
by
GenoMax
142k
See this link for the WGCNA documentation and code from Peter Langfelder : https://bioinformatics.stackexchange.com/questions/21885/where-t…
Comment: anRichment is missing
by
Tatyana
•
0
The problem is back, Horwath's lab web is down again. Is it possible to get anRichment istallation file somewhere? (The greater problem is …
Comment: 16S rRNA microbiome differential abundance analysis with DESeq2 finds same micro
by
andres.firrincieli
3.6k
1. Maribaculaceae is a family not a genus
2. Who said that ASV with the same taxonomic classification must have the same behaviour?
3. With…
Comment: Question regarding WGCNA
by
andres.firrincieli
3.6k
the within-group variability is so small that these look like technical replicates rather than independent biological replicates
Answer: Gene ontology and homologs
by
geneontologyhelp
▴
400
No. Homology is defined as shared common ancestry.
Two genes that take part in the same biological process may not have the same functio…
Answer: error in R code
by
Matthias Zepper
4.6k
I quickly googled [the source code of that function][1], and the error is triggered by this condition:
if(length(wn) < 1 || !is.whol…
Comment: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
by
kalavattam
▴
190
Thanks for the explanation.
I noticed and corrected a typo in which "*read* reverse strand" initially read as "*mate* reverse strand" in t…
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
sovrappensiero
▴
90
It's a commercial product, a *Staphylococcus hominis* genome. This species is not found in the DADA2 results, so I guess DADA2 is not ident…
Comment: Question regarding WGCNA
by
Ram
43k
Plots are incomplete without legends. Please share the complete plot with mappings for shape and color.
Comment: Quetion regarding WGCNA
by
deepak
•
0
Thank you for your reply andres.firrincieli. I have attached the PCA plot of the expression data used in the WGCNA.
version 2.3.6
version 2.3.6