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can you show us an exonic position in your VCF file that is all `./.`?
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Thank you. This answers my question. The reason I am asking is because I’m trying to do set enrichment analysis with BRENDA pathways using…
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just to clarify, it is not that the program algorithm works differently but the meaning of the flags changed;
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Thanks Ram. Using merge maxed out my ram on a large list, but your suggestion directed me to purrr::reduce which works great.
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features <- SelectIntegrationFeatures(object.list = merged_dat)
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https://maayanlab.cloud/clustergrammer/
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The comparison you've done seems exactly right to test whether treatment 2 modifies or enhances the effect of treatment 1.
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Oh wow, bedops closest-features, how did I overlook that!! I didn't know about it; thank you! Your awk script is beautiful. This worked per…
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Thank you Pierre! I'll try this out with my full data set.
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