Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : today
all time
today
this week
this month
this year
27 results • Page
1 of 1
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
5
views
Post-imputation plot
michigan-imputation-server
quality-control
updated just now by
Ram
43k • written 6 minutes ago by
kl
▴ 10
0
votes
4
replies
43
views
FastQC Quality per tile and per sequence behaving strange after using Cutadapt
fastqc
illumina
paired-end
cutadapt
updated just now by
Ram
43k • written 1 hour ago by
salias
• 0
0
votes
0
replies
12
views
Using limma in methylation EM-seq?
EM-seq
methylation
1 hour ago by
Lluís R.
★ 1.2k
0
votes
0
replies
18
views
Synteny analysis
bacterial
synteny
genome
updated 1 hour ago by
GenoMax
141k • written 1 hour ago by
Namil
• 0
0
votes
2
replies
34
views
Genbank File Format
gbkformat
updated 47 minutes ago by
Mensur Dlakic
★ 27k • written 1 hour ago by
alenew.am
• 0
0
votes
0
replies
30
views
Assist me in determining whether the analysis process using the limma package has been executed correctly
limma
ArrayExpress
DifferentialExpression
GEOquery
2 hours ago by
SSSJec
• 0
0
votes
2
replies
48
views
Software to separate reads from different individuals
software
development
nanopore
1 hour ago by
njornet
▴ 20
0
votes
0
replies
23
views
Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genomes
Genomics
Bioinformatics
ATACseq
CancerResearch
2 hours ago by
David
• 0
0
votes
2
replies
74
views
How to update R on ubuntu
installation
update
R
apt-get
2 hours ago by
Bosberg
▴ 50
0
votes
0
replies
45
views
LEfSe
LEfSe
5 hours ago by
benkosta
• 0
0
votes
0
replies
37
views
How should I handle read counts derived from SGSeq when I want to build DEXSeqDataSet object
DEXSeq
DEXSeqDataSet
SGSeq
3 hours ago by
Sara
▴ 30
0
votes
2
replies
87
views
Longitudinal analysis of subpopulations: which approach is better?
differential-expression
DEG
model
6 hours ago by
Lluís R.
★ 1.2k
0
votes
0
replies
52
views
Comparing peptide sequences with MS/MS peptide data using MaxQuant
Transcriptomics
Mass
Bioinformatics
spectrometry
Proteins
9 hours ago by
atharvakarkare14
▴ 10
0
votes
1
reply
84
views
What should I consider as FASTA for dataset?
PDB
FASTA
updated 4 hours ago by
GenoMax
141k • written 10 hours ago by
Nafi
• 0
0
votes
0
replies
45
views
Differential accessibility using DiffBinf
diffbind
11 hours ago by
Shloka
• 0
0
votes
0
replies
50
views
vg call vs vg surject
vg
variation
graphs
updated 4 hours ago by
GenoMax
141k • written 12 hours ago by
aliraza3119
• 0
0
votes
1
reply
77
views
Can I merge Hi-C fastq files from different lanes?
GenomeAssembly
BWA-MEM2
Hi-C
updated 4 hours ago by
GenoMax
141k • written 12 hours ago by
Winter
• 0
0
votes
1
reply
158
views
Finding batch and outlayers
Pca
updated 8 hours ago by
christopher medway
▴ 450 • written 17 hours ago by
Tigran
• 0
2
votes
2
replies
146
views
PDB related issue
rcsb
pdb
updated 17 hours ago by
noodle
▴ 570 • written 20 hours ago by
Nafi
• 0
0
votes
9
replies
2.5k
views
6 follow
Cannot process all the reads in a fast5 file?
metagenome
base-calling
fastq
nanopore
updated 11 hours ago by
Ram
43k • written 8 months ago by
Gio
• 0
0
votes
0
replies
88
views
adjusting for confounders in LMER in R
confounders
LMER
R
updated 1 hour ago by
dariober
14k • written 1 day ago by
rene.j.erhardt
▴ 20
1
vote
3
replies
242
views
How to assign cell types after integration in scRNA
scRNA-seq
updated 23 hours ago by
ATpoint
82k • written 1 day ago by
Francesco
▴ 10
1
vote
3
replies
336
views
PCA plot
DESeq2
PCAplot
updated 22 hours ago by
LauferVA
4.2k • written 4 days ago by
Aaliya
▴ 10
1
vote
7
replies
341
views
Downsampling fastq file
downsample
fastq
updated 1 hour ago by
Ram
43k • written 7 days ago by
marco.barr
▴ 80
0
votes
3
replies
291
views
CWl and toil singularity image e.g busybox? Thank you
toil
singularity
updated 1 hour ago by
Ram
43k • written 4 months ago by
Fadi
• 0
2
votes
5
replies
913
views
Retrieval of Active site information programmatically
Catalytic
Python
Active
PDB
site
Site
updated just now by
Wayne
★ 2.0k • written 2.0 years ago by
arinjoy
• 0
1
vote
6
replies
2.8k
views
Segmentation fault using gemma
gemma
gwas
updated 4 hours ago by
dimpleadiwal050896
• 0 • written 4.9 years ago by
ggman
▴ 90
27 results • Page
1 of 1
Recent Votes
Difference between Genotype 0|1 and 1|0 in VCF file?
Answer: Mapping ortholog human and mouse transcript
C: Kallisto missing Bootstrap
Answer: Very low RNA splicing rate for pulmonary AT2 cells
Answer: what is the purpose of indexing the reference genome (Kallisto)
The Biostar Herald for Monday, April 29, 2024
The Biostar Herald for Monday, April 29, 2024
Recent Locations •
All
Italy,
just now
UCLA,
just now
France,
1 minute ago
Hong Kong,
1 minute ago
United States,
1 minute ago
United States,
3 minutes ago
Sheffield, UK,
6 minutes ago
Recent Awards •
All
Scholar
to
e.r.zakiev
▴ 200
Popular Question
to
Bine
▴ 60
Popular Question
to
Deepak Tanwar
★ 4.2k
Popular Question
to
Chris
▴ 260
Popular Question
to
Trivas
★ 1.7k
Popular Question
to
noodle
▴ 570
Popular Question
to
SaltedPork
▴ 170
Recent Replies
Comment: When to use .vcf or .gvcf files from GATK HaplotypeCaller?
by
Medhat
9.7k
"./." in your gVCF files typically indicates a lack of information or uncertainty about the genotype at that particular position. This co…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt
by
salias
• 0
Fungal ITS2 region (length is really variable so read-through can be an issue)
Answer: Is it possible to bulk download files from GEO repository?
by
noodle
▴ 570
Also try the NCBI AWS bucket transfer tool. It's extremely convenient, however it's not instantaneous and you need to have a (paid) AWS acc…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt
by
GenoMax
141k
Check a random sampling of reads to make sure the adapters are being removed. You may also want to blast a few reads to ensure that there i…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt
by
salias
• 0
Many thanks for your comment. If read-through is happening, shouldn't Cutadapt being taking care of that there? I provided to the Cutadapt …
Comment: How should I make kallisto indexes?
by
bioinfo
▴ 150
Thank you. I will read the documentation you attached. Are you going to slowly phase out the not kb ref commands? Also, does the t2g.txt fi…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt
by
GenoMax
141k
> I need to understand why is this happening More than likely you have library fragments that are shorter than the length of sequencing. W…
Comment: Genbank File Format
by
Mensur Dlakic
★ 27k
I think this is a question for CLC support. It should be trivial for them to combine these fields into one. In other words, you need a bett…
Answer: Programmatically retrieving positions of protein active site residues
by
Mensur Dlakic
★ 27k
Although this probably doesn't qualify as `programmatically retrieving positions`, you can always do it by sequence alignments. This can be…
Answer: metagenomic virome quality assessment
by
Mensur Dlakic
★ 27k
The error message points to a problem with `prodigal-gv`. What happens when you type `prodigal-gv` on the command line? It is never a go…
Comment: Programmatically retrieving positions of protein active site residues
by
Wayne
★ 2.0k
"I have seen other similar posts but a lot of the tools and websites suggested are down." Please show & share your research as part of you…
Comment: Software to separate reads from different individuals
by
njornet
▴ 20
No... the extracted sample is already a mix so no way to barcode
Comment: Very low RNA splicing rate for pulmonary AT2 cells
by
e.r.zakiev
▴ 200
For anyone it might be useful: a colleague of mine, who was not dumb to use the wrong annotation `gtf` as I did, also observed an important…
Answer: Very low RNA splicing rate for pulmonary AT2 cells
by
e.r.zakiev
▴ 200
Hello people sorry I am dumb the problem lied in the fact that I had mouse cells but my `.gtf` transcriptome file was for the human. Now wi…
Comment: Genbank File Format
by
GenoMax
141k
Can you indicate if you need to do this within CLC or can use an external solution (if someone provides it here). If you need to do this in…
Traffic: 2805 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6