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Recent Replies
Comment: Perl. How to retrieve data until a keyword in GenBank?
by
Fungi-Beware!
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10
THANK YOU!! Your method works!!
And by removing:
$data = '';
I figured out how to retrieve the annotation info with a prompt:
…
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data.
by
Yeeshouw
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0
Yes, I am inputting a GTF file. I reviewed the `[featureCounts][1]` documentation, and I could not find this `extraAttributes` parameter. …
Comment: Italicise annotations with pheatmap
by
jamie.pike
▴
80
@ATpoint Very true! I'm not so familiar with many image editing software and I wonder if it will be just as quick for me to try in R, but I…
Comment: Italicise annotations with pheatmap
by
jamie.pike
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80
You're right, I was trying to save time and not write for in ComplexHeatmap, but using @Trivas ComplexHeatmap::pheatmap() should help! Than…
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data.
by
Yeeshouw
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0
Thank you very much for information! I am able to see this column you mention.
Comment: Italicise annotations with pheatmap
by
ATpoint
72k
I might be the party pooper but I generally think that these sorts of aesthetics should be done later in something like Inkscape. In R do t…
Comment: Embryo transcriptome
by
ATpoint
72k
Just one, that is how the convention is. One sample (SRX...) can have one or many SRR entries. If many you can merge them prior to quantifi…
Comment: What kind of statistical test does Cellranger count use?
by
ATpoint
72k
Clustering is not a statistical test with p-values. It is unclear what you mean. Actually, I would just ignore everything that the blackbox…
Comment: Information on sequin RNA spike in standards
by
Ram
39k
I'd try emailing the authors for a link.
Comment: Calculate Radius of Gyration [python 3]
by
Franco
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0
I know it's been a long time since this been discussed.
Anyways, I did a script of mine to calculate the gyration radius for a couple of PD…
Answer: Eigen genes using WGCNA
by
chaco001
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40
I think this is very old, but I think the commenters are misinterpreting your (miswritten) question. Based on the back-and-forth, you aren'…
Comment: Embryo transcriptome
by
firefox91
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0
Thank you so much ! I find the articles but not the data of the papers, do you have a link please ?
Comment: Perl. How to retrieve data until a keyword in GenBank?
by
Pierre Lindenbaum
154k
cross posted: https://stackoverflow.com/questions/76405846
Comment: Embryo transcriptome
by
firefox91
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0
This result from SRA for example. I can download the file with the SRA toolkit but how to know how many transcriptomes this file co
version 2.3.6
version 2.3.6