updated 20 days ago by
psb7
▴
20
•
written 5.7 years ago by
Kevin Blighe
87k
98
votes
106
replies
46k
views
26 follow
87
votes
24
replies
23k
views
17 follow
Tutorial:
Gene Set Enrichment Analysis
updated 11 days ago by
Gordon
•
0
•
written 3.5 years ago by
Hamid Ghaedi
3.2k
76
votes
72
replies
19k
views
19 follow
4 days ago by
Kevin Blighe
87k
7
votes
3
replies
2.8k
views
updated 10 days ago by
colindaven
6.4k
•
written 16 months ago by
Dr.Animo
▴
130
5
votes
13
replies
1.2k
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
updated 8 days ago by
ATpoint
82k
•
written 9 days ago by
BioinfGuru
★
1.7k
4
votes
4
replies
393
views
updated 1 day ago by
BioinfGuru
★
1.7k
•
written 4 days ago by
Ming Tommy Tang
★
3.9k
1
vote
0
replies
178
views
Tutorial:
DNA Methylation: Sequencing Techniques
Recent Votes
Recent Locations •
All
The Netherlands, 1 minute ago
South Korea, 1 minute ago
India, 2 minutes ago
United Kingdom, 4 minutes ago
State College, PA, 4 minutes ago
Germany, 5 minutes ago
France, 6 minutes ago
Recent Awards •
All
Popular Question to
christopher medway
▴
450
Popular Question to
Zhenyu Zhang
★
1.2k
Popular Question to
WUSCHEL
▴
750
Teacher to
Mensur Dlakic
★
27k
Teacher to
Jeremy Leipzig
22k
Popular Question to
AshleeThomson
▴
80
Popular Question to
michael.flower.14
▴
180
Recent Replies
Comment: Questions about a bug when transferring cram file to bam file
by
jkbonfield
★
1.2k
Assuming you have network access and the md5sum is registered with the EBI's reference server, yes - it'll be downloaded and cached locally.
Comment: Downsampling fastq file
by
marco.barr
▴
80
I followed your advice and it seems that I'm getting results comparable to what I was getting before. Upon checking with `wc -l` on the ori…
Comment: Finding batch and outlayers
by
christopher medway
▴
450
You could perform an ANOVA to test if there is a significant association between batch number and a given Principal Component
Comment: ChIP-seq datasets: input samples omitted?
by
i.sudbery
19k
Fascinating!
We also use inputs when doing metagene to protect against those situations where regions up or downstream of our metagene al…
Answer: How to solve DESeq2 Error in checkFullRank(modelMatrix)?
by
i.sudbery
19k
See the section on non full rank design matrices in the DESeq2 manual.
In this case your problem is that healthy and 0dpi samples are e…
Comment: NGS forensics: how to know if data is fabricated
by
i.sudbery
19k
Can you clarify what you mean by "100% of reads pass cutadapt, even though 70% of reads contain adapters and get trimmed. " did you set a m…
Comment: NGS forensics: how to know if data is fabricated
by
i.sudbery
19k
I don't follow your argument for distinguishing between genomic contamination and freud. A data set being bad in terms of genomic contamin…
Comment: What does it mean single base resolution in sequencing?
by
jinyu
▴
10
Thank you for your detail and great explanation. I do need more time to understand these. And there is still something compuzzling me. For …
Answer: Is it possible to bulk download files from GEO repository?
by
atharvakarkare14
▴
10
Try using this library [GEOparse][1]
[1]: https://github.com/guma44/GEOparse
Answer: How many reads for WGS Sequencing?
by
Ruqaiya
•
0
OK. Problem solved. The problem was from my end.
Thank you both for helping !!
Comment: NGS forensics: how to know if data is fabricated
by
Mensur Dlakic
★
27k
Appreciate the suggestion, but that ship has sailed and reached the other shore. This happened 10+ years ago. To the best of my knowledge n…
Comment: Figures are disappeared from html report of SnpEff
by
analyst
▴
30
Files are not opening in any of the computer (ubuntu/windows). I rereun snpEff annotation but still output html files are having missing im…
Comment: Figures are disappeared from html report of SnpEff
by
analyst
▴
30
I reinstalled nodejs:
> sudo apt-get install nodejs
Its already up to date with version v10.19.0
Answer: NGS forensics: how to know if data is fabricated
by
Prash
▴
280
Mensur, if I were you, I'd probably contact the CA directly and check with him whether they have reproduced the works recently. There coul…
Comment: NGS forensics: how to know if data is fabricated
by
noodle
▴
570
Working on it - it's actually a bit difficult. Low coverage of ribosomal proteins. Low coverage of housekeeping genes ...I'm trying to find…
Traffic: 2642 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6