Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 72 results • page 1 of 3 • next >
2
votes
1
answer
2.4k
views
1
answer
Merge two phased vcf files from 2 pops keeping same ref allele in merged file
bcftools plink beagle written 2.4 years ago by Mr Locuace • 100 • updated 2 days ago by mmunsanbioinfo • 0
0
votes
0
answers
91
views
0
answers
Beagle seems to be stuck in specific scaffolds
vcf java beagle written 6 weeks ago by obidobi • 30
0
votes
0
answers
168
views
0
answers
How does beagle get phase for sites that are NOT in the reference panel
imputation phasing beagle written 4 months ago by curious • 470
1
vote
1
answer
215
views
1
answer
Beagle imputation run time
imputation snp beagle written 4 months ago by joshuaehill • 10 • updated 4 months ago by Bioinformatics_NewComer • 320
2
votes
0
answers
294
views
0
answers
ERROR: Reference and target files have no markers in common in interval: 6:63979-21294564
imputation beagle written 6 months ago by jkheirm • 20 • updated 5 months ago by Biostar ♦♦ 20
8
votes
1
answer
617
views
1
answer
Imputation with BEAGLE 5.1 giving an inconsistent number of alleles error
freebayes beagle written 9 months ago by User000 • 420 • updated 8 months ago by gubrins • 60
0
votes
0
answers
234
views
0
answers
Phasing with Beagle
haplotypes phasing beagle written 9 months ago by gubrins • 60
0
votes
1
answer
278
views
1
answer
Minimum # markers per chromosome/scaffold for imputation with Beagle 5.1
vcf imputation snp beagle written 9 months ago by dario.galanti92 • 0
0
votes
0
answers
418
views
0
answers
Is it acceptable to use ShapeIT for parasite genomes?
shapeit impute2 haplotype phasing beagle written 18 months ago by nataliagru1 • 60 • updated 10 months ago by Biostar ♦♦ 20
0
votes
0
answers
439
views
0
answers
Beagle: Skip intervals with no common markers
vcf conformgt plink beagle written 11 months ago by NS • 0
6
votes
1
answer
4.2k
views
1
answer
Beagle imputation results quality control
vcf imputation beagle written 5.6 years ago by eyb • 190 • updated 11 months ago by zx8754 ♦ 9.9k
4
votes
0
answers
458
views
0
answers
The genotype imputation in Beagle always stop on specific step and can not finish the imputation file
imputation genotype beagle written 11 months ago by r00628112 • 10 • updated 11 months ago by Kevin Blighe ♦ 69k
1
vote
1
answer
1.7k
views
1
answer
BEAGLE 4.1 imputation ending short with "at dag.MergeableDag" message
genome imputation snp beagle written 3.0 years ago by Ryan O • 0 • updated 11 months ago by zx8754 ♦ 9.9k
1
vote
0
answers
382
views
0
answers
About beagle imputation
imputation beagle written 11 months ago by r00628112 • 10 • updated 11 months ago by ATpoint ♦ 44k
1
vote
0
answers
435
views
0
answers
Imputing specific SNPs using Beagle5.1
imputation beagle written 11 months ago by Vivek • 2.4k
0
votes
0
answers
457
views
0
answers
Evaluating switch error rate when phasing with Eagle2?
eagle gwas phasing beagle written 12 months ago by curious • 470
0
votes
1
answer
315
views
1
answer
Invalid allele error when attempting to run Beagle 5.0 splitvcf
vcf imputation beagle written 12 months ago by nadietz • 0 • updated 12 months ago by Pierre Lindenbaum ♦ 133k
0
votes
0
answers
357
views
0
answers
Error while running Beagle for imputation
vcf software error beagle snp genome written 14 months ago by epifaniarango • 0 • updated 14 months ago by Kevin Blighe ♦ 69k
1
vote
0
answers
436
views
0
answers
how to merge genetic map of ChrX nonPAR with PAR1 and PAR2 for imputation?
imputation plink beagle written 14 months ago by nchuang • 250
0
votes
0
answers
398
views
0
answers
How to decide method for imputing the missing genotype in a VCF
shapeit impute2 imputation beagle written 14 months ago by nchuang • 250
0
votes
0
answers
1.2k
views
0
answers
Haplotype phasing and imputation in Beagle 5.1
imputation beagle rehh haplotype phasing written 15 months ago by kas • 0
0
votes
0
answers
448
views
0
answers
haplotype phasing related issues
selscan plink beagle written 15 months ago by kas • 0 • updated 15 months ago by ATpoint ♦ 44k
0
votes
3
answers
1.5k
views
3
answers
Beagle VCF header issue
imputation snp beagle written 2.3 years ago by vmuir • 0 • updated 15 months ago by 530234493 • 0
0
votes
1
answer
455
views
1
answer
"ERROR:...Base position exceeds Integer.MAX_VALUE" using Refined IBD with map file
beagle map refined-ibd plink written 18 months ago by LTDavid • 20 • updated 18 months ago by Philipp Bayer ♦ 6.9k
0
votes
0
answers
642
views
0
answers
BEAGLE 4.0 with ped file output into Refined IBD not identifying segments properly
software error pedigree refined ibd phasing beagle written 18 months ago by LTDavid • 20
0
votes
0
answers
670
views
0
answers
Running beagle 5.0 Refined-IBD with no map file gives an empty output
refined-ibd phasing beagle written 19 months ago by wz • 0
0
votes
0
answers
428
views
0
answers
Strands are reversed
plink beagle written 19 months ago by richyanicky • 10 • updated 19 months ago by GenoMax ♦ 95k
0
votes
0
answers
572
views
0
answers
Beagle phasing without map and reference parameters
reference map beagle written 19 months ago by Shicheng Guo • 8.5k
2
votes
1
answer
850
views
1
answer
beagle running error: Insufficient space for shared memory file
beagle written 19 months ago by Shicheng Guo • 8.5k
1
vote
0
answers
929
views
0
answers
how to obtain imputation accuracy - allelic R2 in beagle
snp beagle written 20 months ago by mab658 • 80 • updated 20 months ago by zx8754 ♦ 9.9k
<prev • 72 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
  • China, 14 minutes ago
  • UK, 14 minutes ago
  • Chile, 20 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1086 users visited in the last hour
_