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<prev • 48 results • page 1 of 2 • next >
2
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1
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59
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1
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beagle running error: Insufficient space for shared memory file
beagle written 5 days ago by Shicheng Guo • 7.5k
0
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0
answers
106
views
0
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how to obtain imputation accuracy - allelic R2 in beagle
snp beagle written 25 days ago by mab658 • 30 • updated 22 days ago by zx8754 ♦ 7.5k
0
votes
1
answer
140
views
1
answer
Memory error during imputation of full genome data for multiple samples
imputation snp beagle written 24 days ago by waqaskhokhar999 • 40 • updated 23 days ago by ociramoi • 0
0
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0
answers
127
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0
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Imputating individual haplotype phase w/o Plink
haplotypes imputation genetics plink beagle written 10 weeks ago by los • 0
4
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1
answer
2.1k
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1
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Beagle imputation results quality control
vcf imputation beagle written 4.0 years ago by eyb • 180 • updated 3 months ago by Kevin Blighe ♦ 44k
0
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0
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151
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0
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Haplotype association in case-control study with R
R haplotype case-control snp beagle written 5 months ago by melania 2282 • 0
0
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0
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145
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0
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Beagle permanent file
imputation beagle written 5 months ago by cetin.m • 30
0
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0
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961
views
0
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MrBayes Log likelihood stuck on a single value
mrbayes phylogenetics beagle written 2.4 years ago by Whetting • 1.5k • updated 7 months ago by uzmaabdulsalam • 0
0
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0
answers
322
views
0
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How to get "best guess" genotypes after running Beagle 4.1
imputation beagle written 7 months ago by vmuir • 0
0
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1
answer
454
views
1
answer
Beagle VCF header issue
imputation snp beagle written 7 months ago by vmuir • 0
0
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0
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251
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0
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imputation accuracy in beagle
beagle written 9 months ago by vinayreddynannuru • 20 • updated 9 months ago by zx8754 ♦ 7.5k
1
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0
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794
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0
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Merge two phased vcf files from 2 pops keeping same ref allele in merged file
bcftools plink beagle written 9 months ago by Mr Locuace • 90
0
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0
answers
286
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0
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Phasing non-human genomes with Beagle - do I need to divide subjects by population?
snp phasing beagle written 9 months ago by mstagliamonte • 0
2
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1
answer
373
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1
answer
ERROR: Missing one or both alleles for a genotype:
vcf gsub impute beagle written 10 months ago by vinayreddynannuru • 20 • updated 10 months ago by finswimmer ♦ 11k
0
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0
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360
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0
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How to generate the map file for selscan?
selscan phase plink beagle written 11 months ago by Victor • 10
2
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0
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1.5k
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0
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How to run Beagle to impute missing data using reference panel (1000 genome)?
software impute beagle written 13 months ago by nour.hadjz • 0 • updated 13 months ago by zx8754 ♦ 7.5k
3
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0
answers
2.7k
views
0
answers
BEAGLE 4.1 imputation
beagle imputation genotyping written 3.1 years ago by cholingken • 20 • updated 14 months ago by johnnythejota • 0
0
votes
0
answers
740
views
0
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Interpreting phased data from Beagle
haplotype imputation genotype phasing beagle written 15 months ago by chadapohn.chaosrikul • 0
0
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1
answer
953
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1
answer
(resolved) BEAGLE 4.1 imputation ending short with "at dag.MergeableDag" message
genome imputation snp beagle written 17 months ago by Ryan O • 0 • updated 16 months ago by RamRS ♦ 22k
8
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3
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3.7k
views
3
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Beagle 4.1 error : Possible data conversion issue
vcf plink snp beagle written 3.6 years ago by aritra90 • 40 • updated 17 months ago by scottf174 • 0
2
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0
answers
653
views
0
answers
Problem phasing Indels
indels phasing beagle written 18 months ago by hdtms • 20
0
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0
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615
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0
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Is there a phasing algorithm or tool that first determines undeniably present haplotypes?
hardy weinberg haplotype phasing beagle written 23 months ago by anp375 • 160
0
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0
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660
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0
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Beagle Error Reading in .PL file
genome phasing beagle written 23 months ago by karl.fetter • 0
2
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0
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881
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0
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Beagle Error Code_Unable to access jarfile
sequencing beagle snp error jarfile written 24 months ago by yichen503 • 0 • updated 24 months ago by genomax ♦ 68k
0
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0
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1.1k
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0
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Convert beagle output file to plink
plink snp beagle written 2.0 years ago by akang • 90
0
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0
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1.2k
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0
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Questions about IBD segment detection using beagle
ibd snp beagle written 2.1 years ago by xgdong912 • 10
0
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0
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1.7k
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0
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How to determine the haplotypes using Beagle
haplotype snp beagle written 2.5 years ago by akang • 90
0
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0
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916
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0
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How to phase my genome from FamilyTreeDNA to haplotypes
hapmap familytreedna snphap phasing beagle written 2.6 years ago by alexey.minko • 0
1
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0
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908
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0
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Should variant phasing be performed before or after filtering by Minor Allele Frequency?
maf gwas phasing beagle written 2.9 years ago by i.wilson • 10 • updated 2.7 years ago by Biostar ♦♦ 20
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0
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1.3k
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0
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Can Read Back Phased genotypes be used to extend the haplotype blocks with Beagle, Shapeit, FastPhase etc?
shapeit beagle haplotype fastphase readbackphasing written 2.8 years ago by kirannbishwa01 • 1000
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