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<prev • 68 results • page 1 of 3 • next >
8
votes
1
answer
240
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1
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Imputation with BEAGLE 5.1 giving an inconsistent number of alleles error
freebayes beagle written 10 weeks ago by User000 • 380 • updated 9 weeks ago by gabri.mochales • 30
0
votes
0
answers
88
views
0
answers
Phasing with Beagle
haplotypes phasing beagle written 9 weeks ago by gabri.mochales • 30
0
votes
1
answer
122
views
1
answer
Minimum # markers per chromosome/scaffold for imputation with Beagle 5.1
vcf imputation snp beagle written 10 weeks ago by dario.galanti92 • 0
0
votes
0
answers
312
views
0
answers
Is it acceptable to use ShapeIT for parasite genomes?
shapeit impute2 haplotype phasing beagle written 11 months ago by nataliagru1 • 50 • updated 3 months ago by Biostar ♦♦ 20
0
votes
0
answers
193
views
0
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Beagle: Skip intervals with no common markers
vcf conformgt plink beagle written 4 months ago by NS • 0
5
votes
1
answer
3.3k
views
1
answer
Beagle imputation results quality control
vcf imputation beagle written 5.0 years ago by eyb • 180 • updated 4 months ago by zx8754 ♦ 9.3k
4
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0
answers
262
views
0
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The genotype imputation in Beagle always stop on specific step and can not finish the imputation file
imputation genotype beagle written 4 months ago by r00628112 • 10 • updated 4 months ago by Kevin Blighe ♦ 61k
1
vote
1
answer
1.5k
views
1
answer
BEAGLE 4.1 imputation ending short with "at dag.MergeableDag" message
genome imputation snp beagle written 2.5 years ago by Ryan O • 0 • updated 4 months ago by zx8754 ♦ 9.3k
1
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0
answers
203
views
0
answers
About beagle imputation
imputation beagle written 4 months ago by r00628112 • 10 • updated 4 months ago by ATpoint ♦ 36k
1
vote
0
answers
164
views
0
answers
Imputing specific SNPs using Beagle5.1
imputation beagle written 4 months ago by Vivek • 2.4k
0
votes
0
answers
234
views
0
answers
Evaluating switch error rate when phasing with Eagle2?
eagle gwas phasing beagle written 5 months ago by curious • 320
0
votes
1
answer
170
views
1
answer
Invalid allele error when attempting to run Beagle 5.0 splitvcf
vcf imputation beagle written 6 months ago by nadietz • 0 • updated 6 months ago by Pierre Lindenbaum ♦ 129k
0
votes
0
answers
226
views
0
answers
Error while running Beagle for imputation
vcf software error beagle snp genome written 7 months ago by epifaniarango • 0 • updated 7 months ago by Kevin Blighe ♦ 61k
1
vote
0
answers
252
views
0
answers
how to merge genetic map of ChrX nonPAR with PAR1 and PAR2 for imputation?
imputation plink beagle written 8 months ago by nchuang • 210
0
votes
0
answers
209
views
0
answers
How to decide method for imputing the missing genotype in a VCF
shapeit impute2 imputation beagle written 8 months ago by nchuang • 210
0
votes
0
answers
662
views
0
answers
Haplotype phasing and imputation in Beagle 5.1
imputation beagle rehh haplotype phasing written 8 months ago by kas • 0
0
votes
0
answers
244
views
0
answers
haplotype phasing related issues
selscan plink beagle written 8 months ago by kas • 0 • updated 8 months ago by ATpoint ♦ 36k
0
votes
3
answers
1.1k
views
3
answers
Beagle VCF header issue
imputation snp beagle written 20 months ago by vmuir • 0 • updated 9 months ago by 530234493 • 0
0
votes
1
answer
320
views
1
answer
"ERROR:...Base position exceeds Integer.MAX_VALUE" using Refined IBD with map file
beagle map refined-ibd plink written 11 months ago by LTDavid • 20 • updated 11 months ago by Philipp Bayer ♦ 6.7k
0
votes
0
answers
434
views
0
answers
BEAGLE 4.0 with ped file output into Refined IBD not identifying segments properly
software error pedigree refined ibd phasing beagle written 11 months ago by LTDavid • 20
0
votes
0
answers
433
views
0
answers
Running beagle 5.0 Refined-IBD with no map file gives an empty output
refined-ibd phasing beagle written 12 months ago by wz • 0
0
votes
0
answers
324
views
0
answers
Strands are reversed
plink beagle written 12 months ago by richyanicky • 10 • updated 12 months ago by genomax ♦ 85k
0
votes
0
answers
327
views
0
answers
Beagle phasing without map and reference parameters
reference map beagle written 12 months ago by Shicheng Guo • 8.2k
2
votes
1
answer
531
views
1
answer
beagle running error: Insufficient space for shared memory file
beagle written 12 months ago by Shicheng Guo • 8.2k
1
vote
0
answers
628
views
0
answers
how to obtain imputation accuracy - allelic R2 in beagle
snp beagle written 13 months ago by mab658 • 70 • updated 13 months ago by zx8754 ♦ 9.3k
0
votes
1
answer
424
views
1
answer
Memory error during imputation of full genome data for multiple samples
imputation snp beagle written 13 months ago by waqaskhokhar999 • 80 • updated 13 months ago by ociramoi • 0
0
votes
0
answers
451
views
0
answers
Imputating individual haplotype phase w/o Plink
haplotypes imputation genetics plink beagle written 15 months ago by los • 0
0
votes
0
answers
310
views
0
answers
Haplotype association in case-control study with R
R haplotype case-control snp beagle written 17 months ago by melania 2282 • 90
0
votes
0
answers
314
views
0
answers
Beagle permanent file
imputation beagle written 18 months ago by cetin.m • 50
0
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0
answers
1.3k
views
0
answers
MrBayes Log likelihood stuck on a single value
mrbayes phylogenetics beagle written 3.4 years ago by Whetting • 1.5k • updated 19 months ago by uzmaabdulsalam • 0
<prev • 68 results • page 1 of 3 • next >
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