Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: beagle • reset
or   Classic search
<prev • 37 results • page 1 of 2 • next >
2
votes
1
answer
81
views
1
answer
ERROR: Missing one or both alleles for a genotype:
vcf gsub impute beagle written 24 days ago by vinayreddynannuru • 20 • updated 24 days ago by finswimmer ♦ 4.4k
0
votes
0
answers
76
views
0
answers
How to generate the map file for selscan?
selscan phase plink beagle written 4 weeks ago by Victor • 10
2
votes
0
answers
280
views
0
answers
How to run Beagle to impute missing data using reference panel (1000 genome)?
software impute beagle written 3 months ago by nour.hadjz • 0 • updated 3 months ago by zx8754 ♦ 4.8k
3
votes
0
answers
1.8k
views
0
answers
BEAGLE 4.1 imputation
beagle imputation genotyping written 2.3 years ago by cholingken • 20 • updated 4 months ago by johnnythejota • 0
0
votes
0
answers
274
views
0
answers
Interpreting phased data from Beagle
haplotype imputation genotype phasing beagle written 5 months ago by chadapohn.chaosrikul • 0
0
votes
1
answer
462
views
1
answer
(resolved) BEAGLE 4.1 imputation ending short with "at dag.MergeableDag" message
genome imputation snp beagle written 7 months ago by Ryan O • 0 • updated 6 months ago by Ram ♦ 17k
8
votes
3
answers
2.9k
views
3
answers
Beagle 4.1 error : Possible data conversion issue
vcf plink snp beagle written 2.7 years ago by aritra90 • 20 • updated 7 months ago by scottf174 • 0
2
votes
0
answers
383
views
0
answers
Problem phasing Indels
indels phasing beagle written 8 months ago by hdtms • 20
0
votes
0
answers
411
views
0
answers
Is there a phasing algorithm or tool that first determines undeniably present haplotypes?
hardy weinberg haplotype phasing beagle written 12 months ago by anp375 • 140
0
votes
0
answers
424
views
0
answers
Beagle Error Reading in .PL file
genome phasing beagle written 13 months ago by karl.fetter • 0
2
votes
0
answers
565
views
0
answers
Beagle Error Code_Unable to access jarfile
sequencing beagle snp error jarfile written 14 months ago by yichen503 • 0 • updated 14 months ago by genomax ♦ 54k
0
votes
0
answers
757
views
0
answers
Convert beagle output file to plink
plink snp beagle written 14 months ago by akang • 90
0
votes
0
answers
808
views
0
answers
Questions about IBD segment detection using beagle
ibd snp beagle written 15 months ago by xgdong912 • 10
0
votes
0
answers
638
views
0
answers
MrBayes Log likelihood stuck on a single value
mrbayes phylogenetics beagle written 19 months ago by Whetting • 1.5k • updated 18 months ago by Biostar ♦♦ 20
0
votes
0
answers
1.2k
views
0
answers
How to determine the haplotypes using Beagle
haplotype snp beagle written 20 months ago by akang • 90
0
votes
0
answers
669
views
0
answers
How to phase my genome from FamilyTreeDNA to haplotypes
hapmap familytreedna snphap phasing beagle written 22 months ago by alexey.minko • 0
1
vote
0
answers
727
views
0
answers
Should variant phasing be performed before or after filtering by Minor Allele Frequency?
maf gwas phasing beagle written 2.1 years ago by i.wilson • 10 • updated 22 months ago by Biostar ♦♦ 20
1
vote
0
answers
1.0k
views
0
answers
Can Read Back Phased genotypes be used to extend the haplotype blocks with Beagle, Shapeit, FastPhase etc?
shapeit beagle haplotype fastphase readbackphasing written 23 months ago by kirannbishwa01 • 830
2
votes
1
answer
1.1k
views
1
answer
Haplotype phasing for non-human model organism
shapeit impute2 haplotype phasing beagle written 2.3 years ago by kirannbishwa01 • 830 • updated 2.3 years ago by Zev.Kronenberg ♦ 11k
1
vote
0
answers
776
views
0
answers
Is it better to phase two populations together or separately?
populations phasing beagle written 2.8 years ago by eyb • 150 • updated 2.7 years ago by Giovanni M Dall'Olio ♦ 26k
1
vote
0
answers
901
views
0
answers
Phasing a portion of chromosome vs whole chromosome using Beagle?
snp phasing beagle written 2.8 years ago by alek0991 • 0 • updated 2.7 years ago by Biostar ♦♦ 20
0
votes
0
answers
933
views
0
answers
phase genotype data (infer haplotypes) for multiple families
software haplotype family data phasing beagle written 3.0 years ago by Teresa • 0 • updated 2.9 years ago by Biostar ♦♦ 20
2
votes
1
answer
1.4k
views
1
answer
Background information and recommendations for phasing ASW whole genomes
ngs phasing beagle written 4.3 years ago by vlaufer • 250 • updated 3.0 years ago by Biostar ♦♦ 20
2
votes
1
answer
1.3k
views
1
answer
Pre-phasing for imputation BEAGLE or MACH
computing time mach imputation phasing beagle written 3.0 years ago by Laura • 20 • updated 3.0 years ago by nchuang • 180
0
votes
0
answers
1.6k
views
0
answers
Beagle imputation results quality control
vcf imputation beagle written 3.1 years ago by eyb • 150 • updated 3.0 years ago by Biostar ♦♦ 20
0
votes
0
answers
1.5k
views
0
answers
Beagle imputation output, incorrect genotype probability format?
sequence imputation beagle written 3.2 years ago by Tails • 20
3
votes
2
answers
3.5k
views
2
answers
Compare consecutive columns of a file and return the number of non-matching elements
python haplotype beagle written 3.2 years ago by aritra90 • 20 • updated 3.2 years ago by george.ry • 1.1k
0
votes
1
answer
1.6k
views
1
answer
Compare consecutive columns of a phased Beagle file to generate the number of elements that matches.
beagle awk genotype shell bash written 3.2 years ago by aritra90 • 20
0
votes
0
answers
1.8k
views
0
answers
Trio-based analysis: pipeline for phasing the data
trio-based gatk haplotypecaller phasing beagle written 3.3 years ago by newbee • 20
0
votes
3
answers
2.0k
views
3
answers
Genotype imputation using BEAGLE 3.3.2
genotype imputation beagle written 3.7 years ago by mrodrigues.fernanda • 30 • updated 3.5 years ago by alexamty86 • 0
<prev • 37 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • United Kingdom, 3 minutes ago
  • United States, 8 minutes ago
  • UCSD, 13 minutes ago
  • Australia, 32 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 471 users visited in the last hour