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<prev • 56 results • page 1 of 2 • next >
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Haplotype phasing and imputation in Beagle 5.1
imputation beagle rehh haplotype phasing written 1 day ago by kas • 0
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90
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haplotype phasing related issues
selscan plink beagle written 5 days ago by kas • 0 • updated 4 days ago by ATpoint ♦ 24k
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3
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678
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3
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Beagle VCF header issue
imputation snp beagle written 12 months ago by vmuir • 0 • updated 15 days ago by 530234493 • 0
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Is it acceptable to use ShapeIT for parasite genomes?
shapeit impute2 haplotype phasing beagle written 12 weeks ago by nataliagru1 • 30 • updated 25 days ago by Biostar ♦♦ 20
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"ERROR:...Base position exceeds Integer.MAX_VALUE" using Refined IBD with map file
beagle map refined-ibd plink written 12 weeks ago by LTDavid • 20 • updated 12 weeks ago by Philipp Bayer ♦ 6.5k
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BEAGLE 4.0 with ped file output into Refined IBD not identifying segments properly
software error pedigree refined ibd phasing beagle written 3 months ago by LTDavid • 20
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Running beagle 5.0 Refined-IBD with no map file gives an empty output
refined-ibd phasing beagle written 4 months ago by wz • 0
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Strands are reversed
plink beagle written 4 months ago by richyanicky • 10 • updated 4 months ago by genomax ♦ 73k
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Beagle phasing without map and reference parameters
reference map beagle written 4 months ago by Shicheng Guo • 7.8k
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beagle running error: Insufficient space for shared memory file
beagle written 4 months ago by Shicheng Guo • 7.8k
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how to obtain imputation accuracy - allelic R2 in beagle
snp beagle written 5 months ago by mab658 • 30 • updated 4 months ago by zx8754 ♦ 8.3k
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246
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Memory error during imputation of full genome data for multiple samples
imputation snp beagle written 5 months ago by waqaskhokhar999 • 80 • updated 4 months ago by ociramoi • 0
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Imputating individual haplotype phase w/o Plink
haplotypes imputation genetics plink beagle written 6 months ago by los • 0
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Beagle imputation results quality control
vcf imputation beagle written 4.3 years ago by eyb • 180 • updated 7 months ago by Kevin Blighe ♦ 50k
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208
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Haplotype association in case-control study with R
R haplotype case-control snp beagle written 9 months ago by melania 2282 • 20
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208
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Beagle permanent file
imputation beagle written 9 months ago by cetin.m • 30
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MrBayes Log likelihood stuck on a single value
mrbayes phylogenetics beagle written 2.7 years ago by Whetting • 1.5k • updated 11 months ago by uzmaabdulsalam • 0
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How to get "best guess" genotypes after running Beagle 4.1
imputation beagle written 11 months ago by vmuir • 0
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imputation accuracy in beagle
beagle written 13 months ago by vinayreddynannuru • 20 • updated 13 months ago by zx8754 ♦ 8.3k
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Merge two phased vcf files from 2 pops keeping same ref allele in merged file
bcftools plink beagle written 13 months ago by Mr Locuace • 90
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Phasing non-human genomes with Beagle - do I need to divide subjects by population?
snp phasing beagle written 13 months ago by mstagliamonte • 0
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ERROR: Missing one or both alleles for a genotype:
vcf gsub impute beagle written 15 months ago by vinayreddynannuru • 20 • updated 15 months ago by finswimmer ♦ 12k
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How to generate the map file for selscan?
selscan phase plink beagle written 15 months ago by Victor • 10
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How to run Beagle to impute missing data using reference panel (1000 genome)?
software impute beagle written 17 months ago by nour.hadjz • 0 • updated 17 months ago by zx8754 ♦ 8.3k
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BEAGLE 4.1 imputation
beagle imputation genotyping written 3.4 years ago by cholingken • 20 • updated 18 months ago by johnnythejota • 0
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Interpreting phased data from Beagle
haplotype imputation genotype phasing beagle written 19 months ago by chadapohn.chaosrikul • 0
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(resolved) BEAGLE 4.1 imputation ending short with "at dag.MergeableDag" message
genome imputation snp beagle written 21 months ago by Ryan O • 0 • updated 20 months ago by RamRS ♦ 24k
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Beagle 4.1 error : Possible data conversion issue
vcf plink snp beagle written 3.9 years ago by aritra90 • 60 • updated 21 months ago by scottf174 • 0
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Problem phasing Indels
indels phasing beagle written 22 months ago by hdtms • 20
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Is there a phasing algorithm or tool that first determines undeniably present haplotypes?
hardy weinberg haplotype phasing beagle written 2.2 years ago by anp375 • 160
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