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Recent Replies
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C: Can I use DESeq2 for non-coding RNA? by
igor ♦ 9.6k
> he said that there would still be a lot of rRNA in the samples, and > this amount differs...
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C: SnpSift Annotate replace ID column by
Nicholas Mancuso • 50
I'm running into this exact problem right now. SnpSift seems like the only tool that is smart wit...
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C: Detect sex chromosomes from WGS on a bird species (with reference genome) by
beausoleilmo • 300
The thing is that the reference genome doesn't have "chromosome" level data. Only scaffold. So th...
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C: Detect sex chromosomes from WGS on a bird species (with reference genome) by
JC ♦ 9.5k
align your reads, if the ZW chromosome has unique regions, you can check for coverage.
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C: extracting one snp position from a vcd file by
Pierre Lindenbaum ♦ 126k
you asked many questions on this site. it would be nice if you could validate the correct answer...
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C: how to map NCBI protein IDs to assembly IDs by
genomax ♦ 78k
Use `ADD COMMENT/ADD REPLY` when responding to existing posts to keep threads logically organized...
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C: Can I use DESeq2 for non-coding RNA? by
ATpoint ♦ 29k
> There is some literature that shows edgeR's normalization method may > be better than DE...
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A: Can I use DESeq2 for non-coding RNA? by
colin.kern • 820
> He had mentioned that since the amount of ncRNA varies from sample to > sample, special c...
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C: How to perform the correlation analysis between gene counts (generated from RNA- by
ATpoint ♦ 29k
How many samples do you have?
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A: extracting one snp position from a vcd file by
ATpoint ♦ 29k
`tabix`, see the example in the manual: http://www.htslib.org/doc/tabix.html Essentially you com...
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C: Run RNA-seq analysis with selected targets by
ATpoint ♦ 29k
By the way, if the BAM files contain all reads (so not filtered) you can always transform back to...
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C: ATAC-Seq kmer removal by
ATpoint ♦ 29k
To be honest I would not even care about it. I suggest you map your data and then see if there is...
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