Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 71 results • page 1 of 3 • next >
0
votes
0
answers
82
views
0
answers
How does beagle get phase for sites that are NOT in the reference panel
imputation phasing beagle written 5 weeks ago by curious • 450
1
vote
1
answer
127
views
1
answer
Beagle imputation run time
imputation snp beagle written 7 weeks ago by joshuaehill • 10 • updated 7 weeks ago by Bioinformatics_NewComer • 320
2
votes
0
answers
195
views
0
answers
ERROR: Reference and target files have no markers in common in interval: 6:63979-21294564
imputation beagle written 3 months ago by jkheirm • 20 • updated 9 weeks ago by Biostar ♦♦ 20
8
votes
1
answer
448
views
1
answer
Imputation with BEAGLE 5.1 giving an inconsistent number of alleles error
freebayes beagle written 6 months ago by User000 • 400 • updated 5 months ago by gabri.mochales • 30
0
votes
0
answers
170
views
0
answers
Phasing with Beagle
haplotypes phasing beagle written 6 months ago by gabri.mochales • 30
0
votes
1
answer
207
views
1
answer
Minimum # markers per chromosome/scaffold for imputation with Beagle 5.1
vcf imputation snp beagle written 6 months ago by dario.galanti92 • 0
0
votes
0
answers
361
views
0
answers
Is it acceptable to use ShapeIT for parasite genomes?
shapeit impute2 haplotype phasing beagle written 15 months ago by nataliagru1 • 50 • updated 7 months ago by Biostar ♦♦ 20
0
votes
0
answers
324
views
0
answers
Beagle: Skip intervals with no common markers
vcf conformgt plink beagle written 8 months ago by NS • 0
6
votes
1
answer
3.9k
views
1
answer
Beagle imputation results quality control
vcf imputation beagle written 5.3 years ago by eyb • 190 • updated 8 months ago by zx8754 ♦ 9.7k
4
votes
0
answers
345
views
0
answers
The genotype imputation in Beagle always stop on specific step and can not finish the imputation file
imputation genotype beagle written 8 months ago by r00628112 • 10 • updated 8 months ago by Kevin Blighe ♦ 66k
1
vote
1
answer
1.6k
views
1
answer
BEAGLE 4.1 imputation ending short with "at dag.MergeableDag" message
genome imputation snp beagle written 2.8 years ago by Ryan O • 0 • updated 8 months ago by zx8754 ♦ 9.7k
1
vote
0
answers
313
views
0
answers
About beagle imputation
imputation beagle written 8 months ago by r00628112 • 10 • updated 8 months ago by ATpoint ♦ 40k
1
vote
0
answers
281
views
0
answers
Imputing specific SNPs using Beagle5.1
imputation beagle written 8 months ago by Vivek • 2.4k
0
votes
0
answers
336
views
0
answers
Evaluating switch error rate when phasing with Eagle2?
eagle gwas phasing beagle written 9 months ago by curious • 450
0
votes
1
answer
238
views
1
answer
Invalid allele error when attempting to run Beagle 5.0 splitvcf
vcf imputation beagle written 9 months ago by nadietz • 0 • updated 9 months ago by Pierre Lindenbaum ♦ 131k
0
votes
0
answers
300
views
0
answers
Error while running Beagle for imputation
vcf software error beagle snp genome written 11 months ago by epifaniarango • 0 • updated 11 months ago by Kevin Blighe ♦ 66k
1
vote
0
answers
347
views
0
answers
how to merge genetic map of ChrX nonPAR with PAR1 and PAR2 for imputation?
imputation plink beagle written 11 months ago by nchuang • 230
0
votes
0
answers
310
views
0
answers
How to decide method for imputing the missing genotype in a VCF
shapeit impute2 imputation beagle written 11 months ago by nchuang • 230
0
votes
0
answers
945
views
0
answers
Haplotype phasing and imputation in Beagle 5.1
imputation beagle rehh haplotype phasing written 12 months ago by kas • 0
0
votes
0
answers
357
views
0
answers
haplotype phasing related issues
selscan plink beagle written 12 months ago by kas • 0 • updated 12 months ago by ATpoint ♦ 40k
0
votes
3
answers
1.3k
views
3
answers
Beagle VCF header issue
imputation snp beagle written 2.0 years ago by vmuir • 0 • updated 12 months ago by 530234493 • 0
0
votes
1
answer
381
views
1
answer
"ERROR:...Base position exceeds Integer.MAX_VALUE" using Refined IBD with map file
beagle map refined-ibd plink written 15 months ago by LTDavid • 20 • updated 15 months ago by Philipp Bayer ♦ 6.8k
0
votes
0
answers
556
views
0
answers
BEAGLE 4.0 with ped file output into Refined IBD not identifying segments properly
software error pedigree refined ibd phasing beagle written 15 months ago by LTDavid • 20
0
votes
0
answers
563
views
0
answers
Running beagle 5.0 Refined-IBD with no map file gives an empty output
refined-ibd phasing beagle written 16 months ago by wz • 0
0
votes
0
answers
371
views
0
answers
Strands are reversed
plink beagle written 16 months ago by richyanicky • 10 • updated 16 months ago by genomax ♦ 91k
0
votes
0
answers
460
views
0
answers
Beagle phasing without map and reference parameters
reference map beagle written 16 months ago by Shicheng Guo • 8.4k
2
votes
1
answer
716
views
1
answer
beagle running error: Insufficient space for shared memory file
beagle written 16 months ago by Shicheng Guo • 8.4k
1
vote
0
answers
785
views
0
answers
how to obtain imputation accuracy - allelic R2 in beagle
snp beagle written 17 months ago by mab658 • 80 • updated 17 months ago by zx8754 ♦ 9.7k
0
votes
1
answer
503
views
1
answer
Memory error during imputation of full genome data for multiple samples
imputation snp beagle written 17 months ago by waqaskhokhar999 • 90 • updated 17 months ago by ociramoi • 0
0
votes
0
answers
523
views
0
answers
Imputating individual haplotype phase w/o Plink
haplotypes imputation genetics plink beagle written 19 months ago by los • 0
<prev • 71 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
  • United States, just now
  • Canada, just now
  • Brazil, 3 minutes ago
  • Mexico, 3 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1663 users visited in the last hour