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Bedtools Intersect related

bedtools chip-seq tool bedfiles written 12 days ago by chaudharyc61 • 0 • updated 12 days ago by 2nelly • 160

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574

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Compare a long list of BEDFiles against a whole genome/ chromosome ?

wholegenome bedfiles biopython compare written 2.9 years ago by dearbbhyc • 0 • updated 2.9 years ago by Alex Reynolds ♦ 28k

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How to create Hi-C analysis package HiFive fend object

hi-c hifive python hicup bedfiles written 3.9 years ago by jacel • 0 • updated 3.7 years ago by Biostar ♦♦ 20

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2.5k

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Does multiIntersectBed works with -u and -f parameter?

bedtools intersect bedfiles sequencing written 4.5 years ago by ivivek_ngs • 4.8k • updated 4.5 years ago by Aaronquinlan ♦ 11k

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Recent Replies

C: Is their a way to update HtSeq without uninstalling it? by Carlo Yague • 4.6k
You could also try with pip if pip is installed. sudo pip install htseq --upgrade
C: Is their a way to update HtSeq without uninstalling it? by genomax ♦ 70k
You can install `conda` in user space, your own directories. No root access is needed so it is ea...
C: Specific question about the strands in Illumina paired-end libraries by Diego D. • 50
Hi genomax, Thank you for the feedback. I will check that document out!
C: Specific question about the strands in Illumina paired-end libraries by Diego D. • 50
Thanks for the quick response!
C: Is their a way to update HtSeq without uninstalling it? by rimma.fok • 0
I am working on the cluster and there is no conda environment installed... Is there a way without...
C: Trimming adaptors with trimmomatic by jperezboza • 0
The adaptors from illumina have different sequences depending on the version of the kit used for ...
C: Is their a way to update HtSeq without uninstalling it? by genomax ♦ 70k
How about using [conda][1]? conda search htseq followed by conda create -n htseq_new...
C: The precisionFDA BioCompute Object App-a-thon has been extended to October 18! by hollystephens723 • 50
Sure, let me provide you links describing in more detail the project, BioCompute Objects and thei...
C: Finding housekeeping genes by genomax ♦ 70k
You do not say what genome you are looking for this information for but here are a few past threa...
C: maker installation error by genomax ♦ 70k
If an answer was helpful, you should upvote it; if the answer resolved your question, you should ...
C: Cnv Analysis Of Complete Genomic Data by genomax ♦ 70k
Use `New Post` button at top right of main page.
C: Whole Genome BiSulfite Sequencing and RRBS have 2bp coordiantes in output, how b by genomax ♦ 70k
Please use `ADD COMMENT/ADD REPLY` when responding to existing answers/comments to keep threads l...

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