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Recent Votes
- A: How does PLINK --recode12 code SNPs from ACTG to 1 and 2 in .ped files?
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Recent Replies
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C: HT-Seq count data by
Rob • 20
Thanks ATpoin This worked great
-
C: problems annotating genes using org.Hs.eg.db by
rpolicastro ♦ 3.1k
There are a few common packages with the `select` function, so try to explicitly state the correc...
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C: Segmentation fault (core dumped) error with bigWigAverageOverBed by
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Thank you for your help. So it seems that there is something wrong in Chr column with my BED fil...
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C: GC model file by
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For the SNP6 array, does anyone know where to find the snpfile? Thought it might be in the gw6 f...
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Mutation data for all samples for a particular cohort (LUSC, BRCA, *et cetera*) is availalble in ...
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C: Segmentation fault (core dumped) error with bigWigAverageOverBed by
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That looks like a pretty unusual bed file, where the chromosomes do not look formatted correctly,...
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A: scale free topology in WGCNA by
mrashad • 50
Honestly, it is the first time for me to use WGCNA and I used this tutorial as a guide: https://h...
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A: GSEA from broad institute normalization method by
Kevin Blighe ♦ 69k
Hi, As input to the Broad Institute's GSEA program, you should use any type of expression data t...
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C: problems annotating genes using org.Hs.eg.db by
Kevin Blighe ♦ 69k
What is the output of `str(gene_result)`?
-
C: Subseq a FASTA file by
Explorer • 10
I am not sure about that. When I open it in a text editor, there are blocks of 60nt each while in...
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Yes. Change the command to this: wget -q -O - "https://eutils.ncbi.nlm.nih.gov/entrez/eutils...
-
C: Can't download some proteins using Entrez by
gabrielpoccia • 0
Can you download the GP this way?
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