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Tool: cnv_facets: somatic Copy Number Variant calling using the facets package

tool cancer somatic command line facets cnv written 17 months ago by dariober ♦ 11k

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627

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readSnpMatrix in FACETS gives error

facets purity cnv ploidy written 2.0 years ago by hsbinf • 20

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Merging CNVs from multiple tumor samples from the same patient

multiple samples ngs facets cnv metastasis written 2.8 years ago by sey • 10 • updated 2.8 years ago by markus.riester • 490

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Filter out Non-Diploid segments in FACETS data

R facets cnv sequencing written 3.1 years ago by sviatoslav.kendall • 770

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Recent Replies

C: Advice for a start in Bioinformatics by greesh.nk • 0
Thank you Sir, for the reply. if you have any suggestions, Can you put forward? I have seen in m...
C: Using bcftools merge on the output of multiple process substitution? (somewhat a by RamRS ♦ 27k
It was a comment. I've moved it to an answer now. You should be able to use the green mark to acc...
C: KEGG pathway gene lists differ between sources by aedan.r • 0
Thanks. I hadn't come across that site, but that gives a pretty clear resolution. I thought it w...
C: Adding Gene Name attribute to CDS feature ?? by Mostafa Mahmoud • 0
i just want cp the available in the gff annotation to cds and exon feature
C: Using bcftools merge on the output of multiple process substitution? (somewhat a by curious • 280
Thanks, how do I accept your answer?
C: Using bcftools merge on the output of multiple process substitution? (somewhat a by RamRS ♦ 27k
It should be fine. The line added to the VCF file will replace the process substitution parameter...
C: remove Batch Effect between several **RNA-seq** studies (no replication) by igor ♦ 10k
If you cannot remove that study, does it mean it has information that the other studies don't? In...
C: Roary error message : MSG: Got a sequence without letters. Could not guess alpha by elkassah96 • 0
Thank you , i did it but i didn't find anything abnormal
C: Parsing GENCODE GTF to simpler BED files: am I reinventing the wheel ? by Charles Plessy • 2.7k
As I just found this old post, I would like to comment that I am not using this script anymore. I...
C: Running Blastall Before MCL for Paralog Clustering by brittanymlebert • 10
Thank you so much! Your reply was very helpful!
A: Error with using getBM function in biomaRt by morteza.aslanzadeh • 10
It seems that there was a server error in ```ensembl```. I ran my code again and again (without ...
C: integrate eight single cell *.csv files into one *.csv file by yueli7 • 140
Hello Mensur Dlakic, Thank yo so much for your great help! You are right! Best, Yue

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