Recent Votes
Recent Locations •
All
United States, 2 minutes ago
Australia, 2 minutes ago
Australia, 3 minutes ago
Central, 5 minutes ago
United States, 5 minutes ago
New York, 5 minutes ago
Philadelphia, PA, 6 minutes ago
Recent Awards •
All
Recent Replies
Answer: Extracting Subsets Of Reads From A Bam File
by
jueritation
•
0
Same as previous answers but another option to run Picard script with GATK. It works for me.
gatk FilterSamReads \
-I input.bam…
Answer: Problem using GenomicRanges package
by
bernatgel
★
2.9k
Hi Tristan,
The problem you have is that your tell read.csv that your file has no header (header=FALSE) but it has a header, and so the …
Answer: Trimmomatic log file format explanation?
by
GenoMax
100k
See explanation here: https://www.biostars.org/p/180360/#240183
HWI-D00461:137:C9H2FACXX:4:1101:1229:1999 2:N:0:CTTGTA 77 0 77 24
The…
Comment: beagle error: genotype is missing allele separator
by
ziv_attia
•
0
it seems like there are some added characters at the end of each genotyping _T_A:45,3,0:413375
Comment: Simple Progress Bar with Alignment
by
kevin.maroney
•
0
Thank you for the answers so quickly! So, I actually AM using a conda virtual environment which is where I have installed all my packages (…
Comment: XGBoost on the unbalanced data
by
Mensur Dlakic
★
10k
I have no idea what exactly you have done, so it is impossible to give you a meaningful advice. Did you use `scale_pos_weight`? Did you try…
Comment: XGBoost on the unbalanced data
by
mrashad
▴
50
Really thanks for this tutorial, I used it but in the first trial on my data the AUC results appears have no fitting as its results around …
Comment: quick way to get samples that are NOT homozygous reference for a given record us
by
curious
▴
500
that was it thanks
Comment: SnpMatrix from VCF file
by
binodregmi30
▴
10
I liked the idea of LIma but I did not understand why 0/1 and 1/1 both substitute by 2? my preference is 1/1 substitute by 3.
Comment: SnpMatrix from VCF file
by
binodregmi30
▴
10
I liked the idea by Lima but why substitute 1/1 by 2 again? I would substitute 1/1 by 3.
Comment: quick way to get samples that are NOT homozygous reference for a given record us
by
Pierre Lindenbaum
135k
what is your version of bcftools ? check you're using a recent version.
Answer: How to analysis 4c seq 3c seq data
by
kalavattam
▴
50
To start, you can check [this paper][1], "4C-seq from beginning to end: A detailed protocol for sample preparation and data analysis," and …
Answer: recent Hi-C databases
by
kalavattam
▴
50
- Data, including 3C-related/derived data, for the 4DNucleome project are here: [https://data.4dnucleome.org/][1]
- All data for the ENC…
Comment: quick way to get samples that are NOT homozygous reference for a given record us
by
curious
▴
500
`[filter.c:1379 filters_init1] Error: the tag "INFO/count" is not defined in the VCF header` ?
Comment: Bioinformatics definition of TAD boundary
by
kalavattam
▴
50
> Can anyone provide a formal definition of TAD boundaries in bioinformatic language?
There's not a consensus definition of TAD boundaries…
Traffic: 1916 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6