Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 77 results • page 1 of 3 • next >
0
votes
1
answer
80
views
1
answer
HTseq does not generate any counts file
htseq-count rna-seq written 12 days ago by archisman • 0 • updated 12 days ago by Ido Tamir ♦ 5.0k
5
votes
2
answers
855
views
2
answers
Non-ascii characters in bam file cause htseq-count error
htseq-count star rna-seq written 3 months ago by loui_ • 0 • updated 3 months ago by swbarnes2 ♦ 7.2k
6
votes
2
answers
324
views
5 follow
2
answers
is 0-based start and 1-based end of bed format not compatible with htseq-count?
index-error 0-based start htseq-count bed to gtf written 4 months ago by Zee_S • 50 • updated 4 months ago by michael.ante • 3.6k
1
vote
0
answers
127
views
0
answers
HT-seq-count default parameter to "score"secondary alignments contradicts its documentation that it ignores multi mappers by default. Not clear!
secondary alignment htseq-count multimapping read written 4 months ago by Zee_S • 50
2
votes
0
answers
189
views
0
answers
Can we make a counting program using GFF3 reference files?
rnaseq htseq-count featurecounts written 5 months ago by ino • 0
6
votes
2
answers
382
views
2
answers
Question about exon/intron counting in RNA-seq dataset analysis
htseq-count featurecounts rna-seq written 9 months ago by nanoide • 40 • updated 9 months ago by swbarnes2 ♦ 7.2k
0
votes
1
answer
555
views
1
answer
Ambiguous reads in htseq-count
htseq-count rna-seq written 9 months ago by kousi31 • 10
2
votes
1
answer
288
views
1
answer
how to get gff file bos tau8 from ucsc to import in usegalaxy
gff ucsc htseq-count usegalaxy written 9 months ago by Kian • 40
0
votes
1
answer
684
views
5 follow
1
answer
FASTQ alignment result is really bad
htseq-count salmon rna-seq written 13 months ago by bharata1803 • 450 • updated 13 months ago by h.mon ♦ 29k
4
votes
1
answer
765
views
1
answer
STAR quantMode geneCounts: weird outcomes
htseq-count star rna-seq written 15 months ago by davide.chiarugi • 20
0
votes
0
answers
526
views
0
answers
Normalization of read counts from HTSeq by library size
R htseq-count deseq2 ngs rna-seq written 15 months ago by Susmita Mandal • 60
5
votes
1
answer
574
views
1
answer
Ovation RNA-seq system, bionfomatic alignment and htseq-count
htseq-count rna-seq hisat2 written 15 months ago by nanoide • 40 • updated 15 months ago by caggtaagtat • 930
0
votes
1
answer
1.4k
views
1
answer
Malformed SAM line error with HTSeq
htseq-count written 3.9 years ago by Kssr • 110 • updated 16 months ago by RamRS ♦ 25k
2
votes
0
answers
1.0k
views
0
answers
featurecounts more fragments than input read pairs
htseq-count featurecounts pair-end rna-seq written 18 months ago by ewre • 220 • updated 16 months ago by Biostar ♦♦ 20
1
vote
0
answers
720
views
0
answers
Htseq: High number of no_feature
htseq-count rna-seq written 16 months ago by nadja.g • 0 • updated 16 months ago by genomax ♦ 76k
5
votes
2
answers
793
views
2
answers
Salmon quantification vs HTSeq count quantification
htseq-count salmon written 17 months ago by vincentpailler • 110 • updated 17 months ago by h.mon ♦ 29k
0
votes
0
answers
826
views
0
answers
Preprocessing for DESeq2 - create metadata table
htseq-count deseq2 rna-seq written 17 months ago by alexadeanfitz • 10 • updated 17 months ago by h.mon ♦ 29k
2
votes
1
answer
990
views
1
answer
htseq-count error utf-8 codec can't decode
htseq-count rna-seq written 17 months ago by alexadeanfitz • 10
3
votes
1
answer
631
views
5 follow
1
answer
Using HTseq-count for Pseudomonas Aeruginosa data
htseq-count rna-seq written 17 months ago by jspainhour3 • 10
5
votes
1
answer
1.3k
views
1
answer
Difference between HTSeq-count & Salmon quant results
htseq-count salmon rna-seq written 18 months ago by vincentpailler • 110 • updated 18 months ago by genomax ♦ 76k
4
votes
0
answers
1.3k
views
5 follow
0
answers
HTSeq-count in RNA-Seq
htseq-count rna-seq written 19 months ago by mlemusfuentes • 10
2
votes
1
answer
612
views
1
answer
reasons for htseq-count with zero features
htseq-count rna-seq written 19 months ago by shenwei1376 • 0 • updated 19 months ago by genomax ♦ 76k
12
votes
4
answers
3.4k
views
4
answers
Run htseq-count with multiple sam files?
htseq-count rna-seq written 3.6 years ago by lynne.m.a.harris • 20 • updated 19 months ago by kristoffer.vittingseerup • 3.0k
4
votes
1
answer
1.0k
views
1
answer
HTSeq-count [Python] is not properly counting reads like Genomic Alignments [R] ?
htseq-count rna-seq genomicalignments written 20 months ago by badredda • 120
0
votes
0
answers
486
views
0
answers
Inaccurate read counts when genome/annotation contains alternate loci
htseq-count star rna-seq alternative loci written 20 months ago by viktorfeketa • 20
12
votes
2
answers
6.1k
views
2
answers
how to use a bed file with htseq-count
htseq-count rna-seq written 5.6 years ago by Ann • 2.3k • updated 20 months ago by Biostar ♦♦ 20
4
votes
0
answers
741
views
0
answers
Enough counts for RNA-Seq differential expression analysis
htseq-count rna-seq written 20 months ago by skhan • 10
3
votes
1
answer
1.0k
views
1
answer
Which htseq-count mode to use for handling overlaps during RNA-Seq quantitation
htseq-count rna-seq written 20 months ago by skhan • 10 • updated 20 months ago by lieven.sterck ♦ 6.7k
1
vote
1
answer
2.0k
views
1
answer
htseq-count: error when reading beginning of SAM/BAM file.
htseq htseq-count rna-seq written 21 months ago by cgias • 0 • updated 21 months ago by h.mon ♦ 29k
3
votes
0
answers
1.1k
views
5 follow
0
answers
Htseq-count: discrepancy between raw count value and viewable value of reads on BAM with IGV
htseq-count rna-seq written 2.0 years ago by sophie.ehresmann • 10 • updated 22 months ago by Biostar ♦♦ 20
<prev • 77 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
  • UK, just now
  • Ireland, just now
  • pune, 1 minute ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2110 users visited in the last hour