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<prev • 69 results • page 1 of 3 • next >
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5 follow
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FASTQ alignment result is really bad
htseq-count salmon rna-seq written 10 weeks ago by bharata1803 • 400 • updated 10 weeks ago by h.mon ♦ 23k
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1
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255
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1
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STAR quantMode geneCounts: weird outcomes
htseq-count star rna-seq written 4 months ago by davide.chiarugi • 20
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181
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Normalization of read counts from HTSeq by library size
R htseq-count deseq2 ngs rna-seq written 4 months ago by Susmita Mandal • 20
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1
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260
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1
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Ovation RNA-seq system, bionfomatic alignment and htseq-count
htseq-count rna-seq hisat2 written 4 months ago by nanoide • 10 • updated 4 months ago by caggtaagtat • 430
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1
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Malformed SAM line error with HTSeq
htseq-count written 3.0 years ago by Kssr • 110 • updated 5 months ago by RamRS ♦ 20k
2
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457
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featurecounts more fragments than input read pairs
htseq-count featurecounts pair-end rna-seq written 6 months ago by ewre • 210 • updated 5 months ago by Biostar ♦♦ 20
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310
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Htseq: High number of no_feature
htseq-count rna-seq written 5 months ago by nadja.g • 0 • updated 5 months ago by genomax ♦ 62k
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2
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319
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2
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Salmon quantification vs HTSeq count quantification
htseq-count salmon written 5 months ago by vincentpailler • 50 • updated 5 months ago by h.mon ♦ 23k
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283
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Preprocessing for DESeq2 - create metadata table
htseq-count deseq2 rna-seq written 5 months ago by alexadeanfitz • 10 • updated 5 months ago by h.mon ♦ 23k
2
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1
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448
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1
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htseq-count error utf-8 codec can't decode
htseq-count rna-seq written 6 months ago by alexadeanfitz • 10
3
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1
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377
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5 follow
1
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Using HTseq-count for Pseudomonas Aeruginosa data
htseq-count rna-seq written 6 months ago by jspainhour3 • 0
4
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1
answer
568
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1
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Difference between HTSeq-count & Salmon quant results
htseq-count salmon rna-seq written 6 months ago by vincentpailler • 50 • updated 6 months ago by genomax ♦ 62k
4
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631
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5 follow
0
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HTSeq-count in RNA-Seq
htseq-count rna-seq written 7 months ago by mlemusfuentes • 10
2
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1
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280
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1
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reasons for htseq-count with zero features
htseq-count rna-seq written 8 months ago by shenwei1376 • 0 • updated 8 months ago by genomax ♦ 62k
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4
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4
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Run htseq-count with multiple sam files?
htseq-count rna-seq written 2.7 years ago by lynne.m.a.harris • 10 • updated 8 months ago by kristoffer.vittingseerup • 1.4k
4
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1
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486
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1
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HTSeq-count [Python] is not properly counting reads like Genomic Alignments [R] ?
htseq-count rna-seq genomicalignments written 8 months ago by badredda • 60
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274
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Inaccurate read counts when genome/annotation contains alternate loci
htseq-count star rna-seq alternative loci written 9 months ago by viktorfeketa • 0
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2
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2
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how to use a bed file with htseq-count
htseq-count rna-seq written 4.7 years ago by Ann • 2.2k • updated 9 months ago by Biostar ♦♦ 20
4
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449
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0
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Enough counts for RNA-Seq differential expression analysis
htseq-count rna-seq written 9 months ago by skhan • 10
3
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1
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382
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1
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Which htseq-count mode to use for handling overlaps during RNA-Seq quantitation
htseq-count rna-seq written 9 months ago by skhan • 10 • updated 9 months ago by lieven.sterck ♦ 3.9k
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1
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htseq-count: error when reading beginning of SAM/BAM file.
htseq htseq-count rna-seq written 9 months ago by cgias • 0 • updated 9 months ago by h.mon ♦ 23k
3
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0
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677
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5 follow
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Htseq-count: discrepancy between raw count value and viewable value of reads on BAM with IGV
htseq-count rna-seq written 13 months ago by sophie.ehresmann • 10 • updated 11 months ago by Biostar ♦♦ 20
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1
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featureCounts/HTSeq-count problem with different annotation files
htseq-count featurecounts rna-seq written 3.3 years ago by monteiro.s.rita • 0 • updated 11 months ago by Biostar ♦♦ 20
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6 follow
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HTSEq-Count returns 0 counts for all genes in the counts file!
htseq-count rna-seq written 13 months ago by manish.nu • 0
2
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0
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710
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stranded vs not stranded Htseq-output differences
htseq-count rna-seq written 14 months ago by Ambika • 20
2
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2
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879
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2
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RNAseq: Mapping to ORFs
htseq-count mapping rna-seq counts written 2.5 years ago by chimeric • 0 • updated 15 months ago by Biostar ♦♦ 20
3
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1
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1
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which option is better for DESeq2 analysis: salmon or htseq-count?
htseq-count de salmon rna-seq written 16 months ago by Lila M • 460 • updated 16 months ago by kristoffer.vittingseerup • 1.4k
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1
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exon level quantification using htseq count
htseq-count exon quantifications rna-seq written 17 months ago by komal.rathi • 3.4k • updated 17 months ago by Devon Ryan ♦ 88k
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739
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0
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HtSeq count error
htseq-count rna-seq written 17 months ago by Ron • 870
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858
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0
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Error during htseq-count
htseq-count star pysam written 17 months ago by baffiak1902 • 10
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