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<prev • 78 results • page 1 of 3 • next >
3
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2
answers
108
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2
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Merged vs. Ensembl GTF for htseq-count
htseq-count rna-seq written 5 weeks ago by kousi31 • 10 • updated 5 weeks ago by kristoffer.vittingseerup • 3.3k
5
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0
answers
1.8k
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6 follow
0
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HTSeq-count in RNA-Seq
htseq-count rna-seq written 2.0 years ago by mlemusfuentes • 10 • updated 4 months ago by Balatheskulter • 0
1
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0
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1.4k
views
0
answers
Error during htseq-count
htseq-count star pysam written 2.8 years ago by baffiak1902 • 10 • updated 4 months ago by Biostar ♦♦ 20
10
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3
answers
5.8k
views
3
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htseq-count cannot find pysam
htseq htseq-count quantification rna-seq myposts written 4.6 years ago by Gary • 480 • updated 5 months ago by Payal • 80
0
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1
answer
171
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1
answer
HTseq does not generate any counts file
htseq-count rna-seq written 5 months ago by archisman • 0 • updated 5 months ago by Ido Tamir ♦ 5.1k
5
votes
2
answers
949
views
2
answers
Non-ascii characters in bam file cause htseq-count error
htseq-count star rna-seq written 9 months ago by loui_ • 0 • updated 9 months ago by swbarnes2 ♦ 7.9k
6
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2
answers
495
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5 follow
2
answers
is 0-based start and 1-based end of bed format not compatible with htseq-count?
index-error 0-based start htseq-count bed to gtf written 9 months ago by Zee_S • 50 • updated 9 months ago by michael.ante • 3.6k
1
vote
0
answers
189
views
0
answers
HT-seq-count default parameter to "score"secondary alignments contradicts its documentation that it ignores multi mappers by default. Not clear!
secondary alignment htseq-count multimapping read written 10 months ago by Zee_S • 50
2
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0
answers
264
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0
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Can we make a counting program using GFF3 reference files?
rnaseq htseq-count featurecounts written 10 months ago by ino • 0
6
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2
answers
586
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2
answers
Question about exon/intron counting in RNA-seq dataset analysis
htseq-count featurecounts rna-seq written 14 months ago by nanoide • 50 • updated 14 months ago by swbarnes2 ♦ 7.9k
0
votes
1
answer
838
views
1
answer
Ambiguous reads in htseq-count
htseq-count rna-seq written 15 months ago by kousi31 • 10
2
votes
1
answer
478
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1
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how to get gff file bos tau8 from ucsc to import in usegalaxy
gff ucsc htseq-count usegalaxy written 14 months ago by Kian • 40
0
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1
answer
860
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5 follow
1
answer
FASTQ alignment result is really bad
htseq-count salmon rna-seq written 19 months ago by bharata1803 • 450 • updated 19 months ago by h.mon ♦ 30k
4
votes
1
answer
1.0k
views
1
answer
STAR quantMode geneCounts: weird outcomes
htseq-count star rna-seq written 20 months ago by davide.chiarugi • 20
0
votes
0
answers
685
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0
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Normalization of read counts from HTSeq by library size
R htseq-count deseq2 ngs rna-seq written 20 months ago by Susmita Mandal • 60
5
votes
1
answer
695
views
1
answer
Ovation RNA-seq system, bionfomatic alignment and htseq-count
htseq-count rna-seq hisat2 written 21 months ago by nanoide • 50 • updated 21 months ago by caggtaagtat • 1.1k
0
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1
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1.5k
views
1
answer
Malformed SAM line error with HTSeq
htseq-count written 4.4 years ago by Kssr • 110 • updated 21 months ago by RamRS ♦ 27k
2
votes
0
answers
1.3k
views
0
answers
featurecounts more fragments than input read pairs
htseq-count featurecounts pair-end rna-seq written 23 months ago by ewre • 220 • updated 21 months ago by Biostar ♦♦ 20
1
vote
0
answers
986
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0
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Htseq: High number of no_feature
htseq-count rna-seq written 22 months ago by nadja.g • 0 • updated 22 months ago by genomax ♦ 85k
5
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2
answers
1.0k
views
2
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Salmon quantification vs HTSeq count quantification
htseq-count salmon written 22 months ago by vincentpailler • 140 • updated 22 months ago by h.mon ♦ 30k
0
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0
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1.2k
views
0
answers
Preprocessing for DESeq2 - create metadata table
htseq-count deseq2 rna-seq written 22 months ago by alexadeanfitz • 10 • updated 22 months ago by h.mon ♦ 30k
2
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1
answer
1.2k
views
1
answer
htseq-count error utf-8 codec can't decode
htseq-count rna-seq written 22 months ago by alexadeanfitz • 10
3
votes
1
answer
745
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5 follow
1
answer
Using HTseq-count for Pseudomonas Aeruginosa data
htseq-count rna-seq written 23 months ago by jspainhour3 • 10
5
votes
1
answer
1.8k
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1
answer
Difference between HTSeq-count & Salmon quant results
htseq-count salmon rna-seq written 23 months ago by vincentpailler • 140 • updated 23 months ago by genomax ♦ 85k
2
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1
answer
835
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1
answer
reasons for htseq-count with zero features
htseq-count rna-seq written 2.1 years ago by shenwei1376 • 0 • updated 2.1 years ago by genomax ♦ 85k
12
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4
answers
4.0k
views
4
answers
Run htseq-count with multiple sam files?
htseq-count rna-seq written 4.1 years ago by lynne.m.a.harris • 20 • updated 2.1 years ago by kristoffer.vittingseerup • 3.3k
4
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1
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1.2k
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1
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HTSeq-count [Python] is not properly counting reads like Genomic Alignments [R] ?
htseq-count rna-seq genomicalignments written 2.1 years ago by δΉ™ • 160
0
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0
answers
591
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0
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Inaccurate read counts when genome/annotation contains alternate loci
htseq-count star rna-seq alternative loci written 2.1 years ago by viktorfeketa • 20
12
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2
answers
6.5k
views
2
answers
how to use a bed file with htseq-count
htseq-count rna-seq written 6.1 years ago by Ann • 2.3k • updated 2.1 years ago by Biostar ♦♦ 20
4
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0
answers
883
views
0
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Enough counts for RNA-Seq differential expression analysis
htseq-count rna-seq written 2.2 years ago by skhan • 10
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