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3
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2
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108
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2
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Merged vs. Ensembl GTF for htseq-count
htseq-count rna-seq written 5 weeks ago by kousi3110 • updated 5 weeks ago by kristoffer.vittingseerup3.3k
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0
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1.8k
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6 follow
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HTSeq-count in RNA-Seq
htseq-count rna-seq written 2.0 years ago by mlemusfuentes10 • updated 4 months ago by Balatheskulter0
1
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0
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1.4k
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0
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Error during htseq-count
htseq-count star pysam written 2.8 years ago by baffiak190210 • updated 4 months ago by Biostar ♦♦ 20
10
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3
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5.8k
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3
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htseq-count cannot find pysam
htseq htseq-count quantification rna-seq myposts written 4.6 years ago by Gary480 • updated 5 months ago by Payal80
0
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1
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171
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1
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HTseq does not generate any counts file
htseq-count rna-seq written 5 months ago by archisman0 • updated 5 months ago by Ido Tamir5.1k
5
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2
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949
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2
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Non-ascii characters in bam file cause htseq-count error
htseq-count star rna-seq written 9 months ago by loui_0 • updated 9 months ago by swbarnes27.9k
6
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2
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495
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5 follow
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1
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0
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189
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0
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2
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264
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0
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6
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2
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586
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2
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Question about exon/intron counting in RNA-seq dataset analysis
htseq-count featurecounts rna-seq written 14 months ago by nanoide50 • updated 14 months ago by swbarnes27.9k
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1
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838
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1
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Ambiguous reads in htseq-count
htseq-count rna-seq written 15 months ago by kousi3110
2
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1
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478
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1
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0
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1
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860
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5 follow
1
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FASTQ alignment result is really bad
htseq-count salmon rna-seq written 19 months ago by bharata1803450 • updated 19 months ago by h.mon30k
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1
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1.0k
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1
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0
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0
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685
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0
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5
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1
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695
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1
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Ovation RNA-seq system, bionfomatic alignment and htseq-count
htseq-count rna-seq hisat2 written 21 months ago by nanoide50 • updated 21 months ago by caggtaagtat1.1k
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1
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1.5k
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1
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Malformed SAM line error with HTSeq
htseq-count written 4.4 years ago by Kssr110 • updated 21 months ago by RamRS27k
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0
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1.3k
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0
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featurecounts more fragments than input read pairs
htseq-count featurecounts pair-end rna-seq written 23 months ago by ewre220 • updated 21 months ago by Biostar ♦♦ 20
1
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986
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Htseq: High number of no_feature
htseq-count rna-seq written 22 months ago by nadja.g0 • updated 22 months ago by genomax85k
5
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2
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1.0k
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2
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Salmon quantification vs HTSeq count quantification
htseq-count salmon written 22 months ago by vincentpailler140 • updated 22 months ago by h.mon30k
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1.2k
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0
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Preprocessing for DESeq2 - create metadata table
htseq-count deseq2 rna-seq written 22 months ago by alexadeanfitz10 • updated 22 months ago by h.mon30k
2
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1
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1.2k
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1
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3
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1
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745
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5 follow
1
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5
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1
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1.8k
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1
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Difference between HTSeq-count & Salmon quant results
htseq-count salmon rna-seq written 23 months ago by vincentpailler140 • updated 23 months ago by genomax85k
2
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1
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835
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1
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reasons for htseq-count with zero features
htseq-count rna-seq written 2.1 years ago by shenwei13760 • updated 2.1 years ago by genomax85k
12
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4
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4.0k
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4
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Run htseq-count with multiple sam files?
htseq-count rna-seq written 4.1 years ago by lynne.m.a.harris20 • updated 2.1 years ago by kristoffer.vittingseerup3.3k
4
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1
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1.2k
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1
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0
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0
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591
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0
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12
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2
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6.5k
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2
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how to use a bed file with htseq-count
htseq-count rna-seq written 6.1 years ago by Ann2.3k • updated 2.1 years ago by Biostar ♦♦ 20
4
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0
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883
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