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3
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answers
3.1k
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2
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Metagenomics/De Novo Sequencing
assembly metagenomics ion-torrent written 8.9 years ago by Mala • 10 • updated 11 months ago by Biostar ♦♦ 20
6
votes
1
answer
7.7k
views
1
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Ion Torrent Fastq Format Type?
ion-torrent fastq written 8.9 years ago by Ian ♦ 5.7k • updated 16 months ago by lakhujanivijay ♦ 5.4k
0
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0
answers
773
views
0
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ion torrent pipeline
ion-torrent pipeline snp nextflow variants written 20 months ago by acebolladaso.iacs • 10
1
vote
1
answer
525
views
1
answer
IonTorrent variant calling: "Missing ZM: tags"
ion-torrent variants written 2.4 years ago by graeme.thorn • 50
1
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0
answers
908
views
0
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solution for SPades to assemble genome with low quality data
assembly ion-torrent spades single-end written 2.6 years ago by StudentBio • 0 • updated 2.6 years ago by Sej Modha ♦ 4.8k
2
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1
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3.2k
views
1
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Ion Torrent data quality trimming
trimming ion-torrent written 3.4 years ago by vera.korneeva • 10 • updated 3.4 years ago by 5heikki ♦ 9.3k
2
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1
answer
2.9k
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1
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Mira4 Assembler Taking Too Long Time And Using All Memory For Denovo, Est Assembly
rnaseq bioinformatics ion-torrent est written 7.3 years ago by nbvasani • 230 • updated 5.1 years ago by Biostar ♦♦ 20
35
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3
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2.0k
views
7 follow
3
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What Is Going To Be The Impact Of U$1000 Genome ?
genome ion-torrent written 9.1 years ago by Raony Guimaraes • 100 • updated 5.3 years ago by Biostar ♦♦ 20
9
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2
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3.5k
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6 follow
2
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Alternatives To Newbler To Assemble Ion Torrent Reads?
assembly ion-torrent written 7.8 years ago by 14134125465346445 • 3.5k • updated 6.8 years ago by JC ♦ 12k
5
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2
answers
4.4k
views
2
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Too Many Deg With EdgeR Output?
ion-torrent bacteria edger rna-seq written 7.4 years ago by biotech • 540
11
votes
3
answers
7.3k
views
7 follow
3
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Ion Torrent Mapping
ion-torrent mapping written 8.9 years ago by Ian ♦ 5.7k • updated 7.0 years ago by Biostar ♦♦ 20
0
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0
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5.1k
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0
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P1 And A Adater Trimming And Mapping From Ion Torrent Reads
ion-torrent trimming written 7.3 years ago by serpalma.v • 60
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3
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1.7k
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5 follow
3
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A Better Way To Clean Up Our Data If Not Mapq
ion-torrent samtools mapping written 7.5 years ago by diltsjeri • 440 • updated 7.5 years ago by swbarnes2 ♦ 9.6k
6
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1
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2.6k
views
1
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De Novo Transcriptome Analysis To Get Differential Expression Data
bioinformatics ion-torrent differential-expression written 7.5 years ago by nbvasani • 230 • updated 7.5 years ago by Charles Warden ♦ 8.0k
1
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0
answers
2.4k
views
0
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Determining Each Samples Coverage Area
bedtools ngs ion-torrent coverage written 7.8 years ago by Robert Sicko • 630
1
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1
answer
3.9k
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1
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Is There A Tutorial/Guide Explaining How To Create A Draft Genome From Assembled Contigs?
ngs contigs ion-torrent written 7.8 years ago by Arpitha Hebbar • 200 • updated 7.8 years ago by Josh Herr ♦ 5.7k
3
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1
answer
4.6k
views
1
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Calculating Depth For Each Amplicon From A Mapped Bam
coverage ngs ion-torrent igv written 7.8 years ago by Robert Sicko • 630
0
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0
answers
2.3k
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0
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Ion Variant Hunter
ion-torrent written 8.4 years ago by learnerforever • 520
5
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2
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3.7k
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2
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If I Have Ion Torrent Whole Transcriptome Data, How Can I Look For Specific Genes' Expression?
gene ion-torrent expression transcriptome written 8.8 years ago by jabeller • 0 • updated 8.6 years ago by Michael Dondrup ♦ 48k
5
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2
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4.5k
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2
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Ion Torrent Reference Assembly
assembly ion-torrent reference written 8.8 years ago by diltsjeri • 440 • updated 8.6 years ago by avik • 60
0
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0
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2.0k
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0
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Mira Ion Torrent Not Sanger
sanger ion-torrent mira written 8.8 years ago by diltsjeri • 440 • updated 8.6 years ago by Leonor Palmeira ♦ 3.8k
6
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0
answers
5.1k
views
5 follow
0
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Tutorial: Leveraging Flow Order And Flow Signals From Ion Torrent Data
ion-torrent tutorial written 8.8 years ago by Biostar User • 360 • updated 8.6 years ago by Leonor Palmeira ♦ 3.8k
3
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0
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4.0k
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0
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Tutorial: Comparing 454, Iontorrent And Miseq
miseq ion-torrent 454 tutorial written 8.8 years ago by Istvan Albert ♦♦ 86k • updated 8.6 years ago by Leonor Palmeira ♦ 3.8k
0
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1
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3.0k
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1
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Sequencing Depth And Mutation Frequency
ion-torrent sequencing depth-of-coverage cancer written 8.8 years ago by Luca Beltrame • 220 • updated 8.6 years ago by JC ♦ 12k
3
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2
answers
3.0k
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6 follow
2
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Velvet Raw Seq Assembler
read ion-torrent velvet assembly written 8.9 years ago by tanjafiegel • 40 • updated 8.6 years ago by Leszek ♦ 4.1k
0
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0
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1.9k
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0
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How To Handle Reads Ending With Deletions In Gatk?
indel gatk ion-torrent analysis alignment written 8.8 years ago by Luca Beltrame • 220
1
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1
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3.3k
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1
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Chip-Seq Peak Calling With Ion Torrent Reads
ion-torrent chip-seq written 8.8 years ago by Ian ♦ 5.7k • updated 8.8 years ago by Ying W • 4.0k
3
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0
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2.5k
views
0
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Programs/Parameters For De Novo Transcriptome Assembly Of Ion Torrent Reads?
assembly ion-torrent denovo transcriptome written 9.1 years ago by Ahdf-Lell-Kocks • 1.6k
12
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3
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2.9k
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3
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Ion Torrent Transcriptome Data Sets?
ion-torrent rna transcriptome written 9.2 years ago by Ahdf-Lell-Kocks • 1.6k • updated 9.2 years ago by 2184687-1231-83- • 5.0k
2
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2
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3.3k
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2
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Suitability Of Ion Torrent For 16S Tag Sequencing?
next-gen ion-torrent phylogenetics sequencing written 9.5 years ago by Michael Barton • 1.8k • updated 9.5 years ago by Daniel • 3.8k
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