0
votes
0
replies
83
views
0
votes
0
replies
123
views
4 days ago by
Ben_Ensembl
★
2.4k
0
votes
0
replies
188
views
4 days ago by
Ben_Ensembl
★
2.4k
Recent Votes
Recent Locations •
All
France/Nantes/Institut du Thorax - INSERM UMR1087, 1 minute ago
United Kingdom, 2 minutes ago
Spain, 4 minutes ago
Milan, Italy, 4 minutes ago
Spain, 5 minutes ago
Frankrike, 6 minutes ago
Canada, 7 minutes ago
Recent Awards •
All
Popular Question to
sil_bioinfo
▴
40
Popular Question to
sapuizait
▴
10
Popular Question to
zdiazmar
▴
30
Popular Question to
hkarakurt
▴
180
Student to
John Torcivia
▴
70
Recent Replies
Answer: Rare Disease Variant Pathway Analysis
by
The_PyPanda
▴
10
Thank you LauferVA,
Your advice has been useful and I now a lot to think about and read.
Also, I just wanted to clarify I do not ha…
Comment: CDS vs cDNA vs transcript for mapping RNA-Seq reads
by
Antonio R. Franco
★
5.1k
You cannot do it with Kallisto either. In fact, the indexation will fail in attempting to index a genome file
Comment: PCA plot
by
ATpoint
82k
What is your question? Add details and clarity. Ask a precise question and please avoid opening more questions on the same underlying issue…
Comment: genome assembly records not present in assembly_summary.txt
by
Joe
21k
If you have the accession numbers can you not use something like `eutils`?
Comment: what is the purpose of indexing the reference genome (Kallisto)
by
ATpoint
82k
For question 1: For question 1: Purpose of indexing a genome/transcriptome/book/anything: https://www.biostars.org/p/212594/
For question …
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
> Next, I tried using bedtools window
but in your original post you said
> tried finding the intersection of these bed files using bedto…
Comment: How to trim transcripts using information from NCBI contamination screen report
by
Lada
▴
30
Thank you very much! I tried it out! This is a handy tool useful for many different applications, and in regards to my problem - although …
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
•
0
Thank you for replying Pierre.
I first added a third column to the SNP bed file, so that I would get a range of 1 for each SNP
awk 'B…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
> using bcftools
Show us what you tried
Answer: gvcf joint calling
by
Jeremy Leipzig
22k
> Hi, guys, there is a question about the genomic gVCF file. I wonder
> that since gVCF contains the non-var block records, why after merge…
Comment: Missing protein (VEGF-A) in String db
by
shalespringer
•
0
Thank you for replying here; this helped me figure out why MAPK10 was missing from my results. It was also marked as a pseudogene in the En…
Comment: How to convert plink files to Hapmap Format
by
Sofia
•
0
These are the first lines of the output: (Please is it normal to have NA in the P value column ?)
CHR …
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie
by
atowns21
•
0
So I used the barcodes that I created (combos of positions 1-10 and 11-20) and I obtained similar alignment stats as the paper I pulled the…
Comment: How to convert plink files to Hapmap Format
by
Sofia
•
0
Thank you so much, it actually worked!
Answer: Rare Disease Variant Pathway Analysis
by
LauferVA
4.2k
Hi @efc1e545 ,
First a caveat. the information we most need in order to help guide you to a successful conclusion is not provided in thi…
Traffic: 2773 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6