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bedops --element-of 1 <(gunzip -c merged.vcf.gz | vcf2bed -) <(sort-bed panel.bed) > subset.bed
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Muscle is a multiple sequence alignment program, that might sound a bit confusing but this doesn't mean it is meant to align multiple seque…
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One thing that ChIPseeker has is the flank option. See [here][1]. It defines a flanking region around the peaks, and reports the genes tha…
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Can you please cut and paste the output of:
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Thanks very much!
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The question remains, what should I do with the covariates?
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