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32 results • Page
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News:
Bioinformatics Contest 2020. Call for problems
contest
updated 5 hours ago by
Ram
39k • written 3.7 years ago by
alserg
▴ 830
8
votes
4
replies
1.6k
views
News:
supporting vg users on biostars
variation-graph
genome
vg
vgteam
updated 4 hours ago by
Ram
39k • written 3.7 years ago by
Erik Garrison
★ 2.4k
3
votes
0
replies
590
views
News:
Testing and feedback of upcoming salmon release
salmon
RNA-Seq
updated 5 hours ago by
Ram
39k • written 3.7 years ago by
Rob
6.1k
3
votes
1
reply
1.1k
views
News:
UniProt: Change of FT and CC section in UniProtKB text format
uniprot
protein
updated 4 hours ago by
Ram
39k • written 3.7 years ago by
Elisabeth Gasteiger
★ 2.2k
2
votes
0
replies
783
views
News:
R/Bioconductor for Mass Spectrometry and Proteomics course in Berlin
R
Proteomics
Bioconductor
updated 6 hours ago by
Ram
39k • written 3.8 years ago by
carlopecoraro2
★ 2.3k
2
votes
0
replies
508
views
News:
Introduction to RMarkdown
R
updated 6 hours ago by
Ram
39k • written 3.8 years ago by
carlopecoraro2
★ 2.3k
1
vote
0
replies
982
views
News:
Course: GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
Assembly
Nanopore
updated 4 hours ago by
Ram
39k • written 3.7 years ago by
carlopecoraro2
★ 2.3k
1
vote
0
replies
588
views
News:
Cellosaurus release 32 is available
knowledgebase
database
cell-line
updated 5 hours ago by
Ram
39k • written 3.7 years ago by
Amos Bairoch
▴ 110
1
vote
0
replies
698
views
News:
Free Ensembl browser and REST API workshops: Hinxton, Cambridge, UK, 15/16 October 2019
training-course
Ensembl
workshop
updated 5 hours ago by
Ram
39k • written 3.7 years ago by
Astrid_Ensembl
▴ 330
1
vote
0
replies
701
views
News:
UniProt: Changes to Proteomes
uniprot
proteome
updated 4 hours ago by
Ram
39k • written 3.7 years ago by
Elisabeth Gasteiger
★ 2.2k
0
votes
0
replies
745
views
News:
Training in Bioinformatics for Beginners @NIH
omics
biomedical
updated 6 hours ago by
Ram
39k • written 3.8 years ago by
AABI
▴ 130
0
votes
0
replies
652
views
News:
EMBO | EMBL Symposium: The Organism and its Environment
genotype
organisms
biological
chemical
phenotype
updated 8 hours ago by
Ram
39k • written 3.8 years ago by
EMBL Events
• 0
0
votes
0
replies
594
views
News:
Coding In The Cloud For Biomedical Researchers - Hands-On Training - Live Cast
next-gen-sequencing
rna-seq
ChIP-Seq
updated 6 hours ago by
Ram
39k • written 3.8 years ago by
AABI
▴ 130
0
votes
0
replies
754
views
News:
Programming with Bash and Python
Unix
Bash
Programming
Python
updated 5 hours ago by
Ram
39k • written 3.7 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
666
views
News:
Interested in learning more about CRISPR Genome Editing?
Genome-Editing
CRISPR
updated 5 hours ago by
Ram
39k • written 3.8 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
989
views
News:
9th Programming for Evolutionary Biology Course - March 2-18 2020 in Berlin, Germany
NGS
evolution
workshop
updated 4 hours ago by
Ram
39k • written 3.7 years ago by
David Langenberger
9.9k
0
votes
0
replies
695
views
News:
EMBL PhD programme applications open
phd
embl
updated 5 hours ago by
Ram
39k • written 3.7 years ago by
Emily
23k
0
votes
0
replies
55
views
News:
Generalized Linear Models (GLM) course in R
R
GLM
statistics
11 hours ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
633
views
News:
EMBO | EMBL Symposium: The Four-Dimensional Genome
microscopy
genome
DNA
genomics
updated 6 hours ago by
Ram
39k • written 3.8 years ago by
EMBL Events
• 0
0
votes
1
reply
193
views
News:
7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Variant-Calling
Transcriptomics
RNA-Seq
DNA-Seq
updated 8 hours ago by
Ram
39k • written 25 days ago by
David Langenberger
9.9k
0
votes
0
replies
836
views
News:
R Package design and development and reproducible data science for biologists - FREE ACCOMMODATION
R
updated 5 hours ago by
Ram
39k • written 3.8 years ago by
oliverhooker
▴ 110
0
votes
0
replies
643
views
News:
CFP Special Collection: Parallel Computing in Evolutionary Bioinformatics, SAGE Journal, JCR 2.203 (Q2)
CFP
updated 8 hours ago by
Ram
39k • written 3.8 years ago by
jlguisado
• 0
0
votes
0
replies
689
views
News:
EMBL Conference: Expanding the Druggable Proteome with Chemical Biology
pharmacology
proteome
chemical-biology
genetics
updated 8 hours ago by
Ram
39k • written 3.8 years ago by
EMBL Events
• 0
0
votes
0
replies
678
views
News:
UniProt: Change of line length in UniProtKB text format
uniprot
updated 4 hours ago by
Ram
39k • written 3.7 years ago by
Elisabeth Gasteiger
★ 2.2k
0
votes
0
replies
653
views
News:
UniProt: Change of annotation topic 'Interaction'
uniprot
xml
updated 4 hours ago by
Ram
39k • written 3.7 years ago by
Elisabeth Gasteiger
★ 2.2k
0
votes
0
replies
477
views
News:
Comparative Genomics course in October - last 2 places left
Illumina
Pacbio
nanopore
next-gen
updated 4 hours ago by
Ram
39k • written 3.7 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
634
views
News:
Training in Creating Plots, Graphs and Maps using R @ NIH
Biomedical
next-gen
Data-analysis
updated 5 hours ago by
Ram
39k • written 3.8 years ago by
AABI
▴ 130
0
votes
0
replies
564
views
News:
Comparative Genomics Workshop . registration deadline
assembly
Pacbio
updated 5 hours ago by
Ram
39k • written 3.8 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
692
views
News:
FINAL CALL - 'Introduction to NGS Data Analysis' course in Munich, October 23 - 25
NGS
RNA-Seq
Workshop
DNA-Seq
updated 5 hours ago by
Ram
39k • written 3.8 years ago by
David Langenberger
9.9k
0
votes
0
replies
651
views
News:
Training in Rosetta for Molecular Modeling and Design @NIH
Molecular-Design
Modeling
RNA-Seq
Biomedical
updated 5 hours ago by
Ram
39k • written 3.7 years ago by
AABI
▴ 130
0
votes
0
replies
609
views
News:
Statistics using R
R
updated 5 hours ago by
Ram
39k • written 3.7 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
745
views
News:
UniProt: Functional annotation of different gene products in UniProtKB/Swiss-Prot
uniprot
protein
xml
updated 4 hours ago by
Ram
39k • written 3.7 years ago by
Elisabeth Gasteiger
★ 2.2k
32 results • Page
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Recent Votes
Efficiently extract alignments with NH:i:1 field
Help with Samtools flags to get only primary, unique, non duplicate aligned reads
Answer: What does canonical transcript mean in the context of VEP
Answer: What does canonical transcript mean in the context of VEP
Comment: Optimum setting for local blastp for ~10K sequences
Perl. How to extract gene entry, CDS and gene sequence from a specified range from GenBank files?
Comment: How to sort gff3 according to chromosome order?
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Comment: Help with running ATAC using Encode pipeline
by
Chris
▴ 100
Thank you for the instruction! I see the beside json file we also have input file which I am confused. Because we have already defined the …
Comment: Comparing loci across catalogs
by
rycro_c
• 0
Hi @Austin, Did you ever figure this out?
Comment: Low mapping percentage
by
Dave Carlson
★ 1.3k
I've been faced with similar issues in the past. Both option 1 and 2 seem useful. You can also treat your data as accidental metagenomic …
Comment: How to sort gff3 according to chromosome order?
by
Pierre Lindenbaum
154k
-s, --stable stabilize sort by disabling last-resort comparison
Comment: Low mapping percentage
by
GenoMax
129k
If you do have contamination (either from rRNA of same species or from true contaminant(s)) there is not much you can do about that at this…
Comment: Optimum setting for local blastp for ~10K sequences
by
GenoMax
129k
> Running the same sequence on the blast web server took 10 seconds Don't try to compare anything local with NCBI's web blast infrastruct…
Comment: how to Construct a Newick tree file from five large fasta files
by
Joe
21k
Yes, I know - but that doesn't answer the question. **What *kind* of phylogenetic tree?**
Comment: Optimum setting for local blastp for ~10K sequences
by
sodiumnitrate
▴ 20
Thank you for the explanation! I managed to get diamond to work, but I'm having trouble getting it to run faster than blast. For a single t…
Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig
by
GenoMax
129k
That is the question @Vincent answer poses since it seems to correspond to something different. You can also create an issue on https://gi…
Answer: How to sort gff3 according to chromosome order?
by
GenoMax
129k
Please use `AGAT`: https://agat.readthedocs.io/en/latest/topological-sorting-of-gff-features.html
Comment: convert data frame with character column to data frame with integer column
by
atemedorri137798
• 0
dear @Basti : As you said in order to clarify my issue I edit question box with give an example. I will be grateful if you take a look at …
Comment: How to sort gff3 according to chromosome order?
by
Ram
39k
Those are your options with the `sort` utility - you can either keep the existing order or re-order by coordinate. If you're looking for a …
Comment: How to sort gff3 according to chromosome order?
by
BioinfoBee
• 0
using sort -k1,1 doesn't keep the order of child features of each gene in output.
Comment: How to sort gff3 according to chromosome order?
by
Ram
39k
You're sorting by chromosome AND co-ordinates. Try just `sort -k1,1`
Comment: How to sort gff3 according to chromosome order?
by
BioinfoBee
• 0
it does sort but not able to keep the child features (mRNA, CDS, exon) in proper order. For example, I can sort using: sort -k1,1 -k4,4n -k…
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