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News: Bioinformatics Contest 2020. Call for problems
contest
updated 6 days ago by 39k • written 3.7 years ago by ▴ 830
8
votes
8
replies
2.3k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 1 day ago by 39k • written 3.3 years ago by 98k
8
votes
4
replies
1.6k
views
News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 6 days ago by 39k • written 3.7 years ago by ★ 2.4k
7
votes
0
replies
851
views
News: New layout for NCBI BLAST FTP database site starting February 4, 2020
ftp blast blast_index blast-plus
updated 2 days ago by 39k • written 3.4 years ago by 130k
6
votes
13
replies
1.5k
views
News: Ensembl reduced functionality: 10th March-16th April 2020
BLAT VEP Ensembl service
updated 2 days ago by 39k • written 3.3 years ago by ★ 2.2k
6
votes
0
replies
809
views
News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
cwl thanks
updated 3 days ago by 39k • written 3.6 years ago by ★ 1.9k
6
votes
4
replies
982
views
News: Course online - Comparative Genomics
assembly genome next-gen alignment
updated 1 hour ago by 39k • written 3.1 years ago by ★ 2.3k
4
votes
2
replies
1.1k
views
News: Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop methylation bisulfite
updated 4 days ago by 39k • written 3.7 years ago by ▴ 970
4
votes
0
replies
1.2k
views
News: ONLINE course - Metagenomics, metatranscriptomics, and multi'omics for microbial community studies
next-gen-sequencing
updated 1 day ago by 39k • written 3.2 years ago by ★ 2.3k
4
votes
1
reply
979
views
News: Bioinformatics Workflows with Nextflow
Netflow reproducibility Workflows
updated 3 days ago by 39k • written 3.5 years ago by ★ 2.3k
4
votes
0
replies
604
views
News: Call for Bioinformatics Papers - Genes Special Issue
gene
updated 3 days ago by 39k • written 3.4 years ago by ▴ 700
3
votes
1
reply
1.1k
views
News: UniProt: Change of FT and CC section in UniProtKB text format
uniprot protein
updated 6 days ago by 39k • written 3.7 years ago by ★ 2.2k
3
votes
0
replies
595
views
News: Testing and feedback of upcoming salmon release
salmon RNA-Seq
updated 6 days ago by 39k • written 3.7 years ago by 6.1k
3
votes
0
replies
658
views
News: ::FINAL CALL:: NGS Data Analysis for Beginners - 11-13 December 2019 in Munich, Germany (2 seats left)
NGS Workshop
updated 3 days ago by 39k • written 3.6 years ago by 9.9k
3
votes
0
replies
1.1k
views
News: Nextflow Training Course
Pipeline Workflow NEXTFLOW
updated 4 days ago by 39k • written 3.7 years ago by ★ 2.3k
3
votes
0
replies
679
views
News: Phylogenomics course in Berlin
snp R next-gen
updated 3 days ago by 39k • written 3.6 years ago by ★ 2.3k
2
votes
0
replies
876
views
News: precisionFDA and Georgetown-ICBI are launching the Brain Cancer Predictive Modeling and Biomarker Discovery Challenge!
brain-tumor artificial-intelligence biomarkers
updated 3 days ago by 39k • written 3.6 years ago by ▴ 150
2
votes
0
replies
591
views
News: Population Genomics course
R SNP next-gen
updated 2 days ago by 39k • written 3.3 years ago by ★ 2.3k
2
votes
0
replies
454
views
News: Comparative Genomics course in Berlin
Assembly next-gen-sequencing alignment
updated 2 days ago by 39k • written 3.3 years ago by ★ 2.3k
2
votes
0
replies
661
views
News: Interested in learning more about Bayesian Statistics?
Bayesian-Statistics R Stan
updated 3 days ago by 39k • written 3.5 years ago by ★ 2.3k
2
votes
0
replies
525
views
News: Tailored online courses in R
Machine-Learning R tidyverse
updated 4 hours ago by 39k • written 3.1 years ago by ★ 2.3k
2
votes
4
replies
916
views
News: Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
R RNA-seq Bioconductor
updated 1 hour ago by 39k • written 3.1 years ago by ★ 2.3k
2
votes
0
replies
630
views
News: Eukaryotic Metabarcoding course in Berlin. Last places left.
JAMP R metabarcoding Obitools
updated 3 days ago by 39k • written 3.4 years ago by ★ 2.3k
2
votes
0
replies
760
views
News: Course - Landscape Genomics. Berlin
Genomics R
updated 4 days ago by 39k • written 3.7 years ago by ★ 2.3k
2
votes
0
replies
494
views
News: 2-day Nextflow training course in Berlin
workflow nextflow
updated 2 days ago by 39k • written 3.4 years ago by ★ 2.3k
2
votes
0
replies
462
views
News: Introduction to NGS data analysis - ONLINE 7th-11th September 2020
Assembly RNA-Seq next-gen-sequencing
updated just now by 39k • written 3.0 years ago by ★ 2.3k
2
votes
0
replies
1.1k
views
News: Introduction to genome-wide association studies (GWAS)
Unix GWAS R
updated 2 days ago by 39k • written 3.4 years ago by ★ 2.3k
2
votes
0
replies
573
views
News: Interested in Machine Learning?
Machine-Learning R
updated 28 minutes ago by 39k • written 3.1 years ago by ★ 2.3k
2
votes
0
replies
419
views
News: ONLINE COURSE-Advanced programming in R
R
updated 4 hours ago by 39k • written 3.2 years ago by ★ 2.3k
2
votes
0
replies
844
views
News: Long-read nanopore Sequencing course
software-error Long-reads assembly nanopore Pacbio
updated 3 days ago by 39k • written 3.4 years ago by ★ 2.3k
2
votes
0
replies
687
views
News: RNAseq data analysis with R and Bioconductor
R RNA-Seq RNA Bioconductor
updated 2 days ago by 39k • written 3.4 years ago by ★ 2.3k
2
votes
0
replies
693
views
News: Landscape Genomics course ONLINE
snp R next-gen
updated 5 hours ago by 39k • written 3.2 years ago by ★ 2.3k
2
votes
0
replies
567
views
News: Introduction to Deep Learning; ONLINE 28th September - 1st October
Machine-Learning Deep-Learning Python
updated 13 minutes ago by 39k • written 3.0 years ago by ★ 2.3k
2
votes
1
reply
2.4k
views
News: RNAseq data analysis with R/ Bioconductor - ONLINE COURSE
R RNA-Seq Bioconductor
updated 1 day ago by 39k • written 3.2 years ago by ★ 2.3k
2
votes
0
replies
566
views
News: Online course - low-coverage whole-genome sequencing data analysis
SNP
updated 23 minutes ago by 39k • written 3.1 years ago by ★ 2.3k
2
votes
0
replies
540
views
News: Online course - Introduction to Machine Learning in R -13-16 July 2020
Machine-Learning R
updated 4 hours ago by 39k • written 3.1 years ago by ★ 2.3k
2
votes
0
replies
482
views
News: Course online - Introduction to Deep Learning; 28th September - 1st October
Deep-Learning Python
updated 1 hour ago by 39k • written 3.1 years ago by ★ 2.3k
2
votes
0
replies
614
views
News: Course in Berlin: Data visualization IN R with ggplot2
dataviz R ggplot2 tidyverse
updated 3 days ago by 39k • written 3.6 years ago by ★ 2.3k
1
vote
3
replies
934
views
News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq
updated 2 days ago by 39k • written 3.3 years ago by 9.9k
1
vote
0
replies
515
views
News: Calling Data Scientists and Bioinformaticians for the NHLBI Big Data Challenge Competition
Big-Data Challenge Competition
updated 1 day ago by 39k • written 3.2 years ago by ▴ 10
1
vote
1
reply
755
views
News: Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection webinar RNA-Seq gene-fusion
updated 2 days ago by 39k • written 3.3 years ago by ▴ 40
1
vote
2
replies
1.5k
views
News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 1 day ago by 39k • written 3.2 years ago by ★ 3.5k
1
vote
0
replies
566
views
News: Cellosaurus release 33 is available
knowledgebase cell-line
updated 3 days ago by 39k • written 3.5 years ago by ▴ 110
1
vote
0
replies
1.1k
views
News: Advanced Sequencing Technologies & Bioinformatics Analysis Course at CSHL: November 3 - 15, 2020
course sequencing workshop
updated 2 days ago by 39k • written 3.4 years ago by 20k
1
vote
0
replies
732
views
News: hackseqRNA: Computational RNA hackathon, Vancouver BC
hackathon RNA
updated 2 days ago by 39k • written 3.3 years ago by ▴ 50
1
vote
2
replies
580
views
News: Ensembl reduced functionality, early March
ensembl
updated 2 days ago by 39k • written 3.4 years ago by 23k
1
vote
0
replies
701
views
News: Free Ensembl browser and REST API workshops: Hinxton, Cambridge, UK, 15/16 October 2019
training-course Ensembl workshop
updated 6 days ago by 39k • written 3.7 years ago by ▴ 330
1
vote
0
replies
529
views
News: New precisionFDA data science challenge: Help advance postmarket surveillance techniques for FDA regulated products
R
updated 2 days ago by 39k • written 3.4 years ago by ▴ 150
1
vote
0
replies
591
views
News: Cellosaurus release 32 is available
knowledgebase database cell-line
updated 6 days ago by 39k • written 3.8 years ago by ▴ 110
1
vote
0
replies
726
views
News: Training in Metagenomics Data Analysis @ NIH,February 10-13,2020
Metagenomics Biomedical next-gen Data-analysis
updated 2 days ago by 39k • written 3.4 years ago by ▴ 130
159 results • Page 1 of 4
Recent Votes
A: How to obtain transcript level TPM using stringtie?
A: How to obtain transcript level TPM using stringtie?
relationship between PI_HAT and --king-cutoff coefficient?
Answer: The .vcf format: is there a file format better suited for the era of pangenomics
Answer: The .vcf format: is there a file format better suited for the era of pangenomics
Answer: ChatGPT optimized for bioinformatics questions
Answer: The .vcf format: is there a file format better suited for the era of pangenomics
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Recent Replies
Answer: Why some insertions are symbolic in ALT column? by LChart 2.7k
I don't know specifically about Sniffles2; but for other callers this typically means that the insert sequence itself couldn't be assembled…
Comment: The .vcf format: is there a file format better suited for the era of pangenomics by Vincent Laufer ★ 3.0k
interesting answer, do you have any source that discusses this where i could read more?
Comment: The .vcf format: is there a file format better suited for the era of pangenomics by Vincent Laufer ★ 3.0k
interesting answer and i like the reference to tile.DB. with regard to 2. - this is the only place you and i might differ .. i think the p…
Answer: The .vcf format: is there a file format better suited for the era of pangenomics by LChart 2.7k
As a bit of a history: the VCF (and to an extent even the .bam format) came out of the research groups working on the 1000G project because…
Comment: BED files by lela2314 • 0
I am trying this: `bedtools intersect -a enhancer_liver2.bed -b chip_tfbs.bed -wb` because the transcription factor is in my second bed …
Comment: The .vcf format: is there a file format better suited for the era of pangenomics by GenoMax 130k
ChatGPT said > VCF files can be extended to represent pangenome variant data by > including information specific to each haplotype or gen…
Answer: The .vcf format: is there a file format better suited for the era of pangenomics by Matthias Zepper 3.7k
[I can't help but be reminded of this XKCD strip][1]. 1. Disagree. In my humble opinion, there is no such thing as an ideal data format,…
Answer: ChatGPT optimized for bioinformatics questions by Vincent Laufer ★ 3.0k
@358a1a47 This is really timely work - two thoughts for consideration: 1) I think that a major focus here should be on devising metr…
Answer: ChatGPT optimized for bioinformatics questions by Ram 39k
I tested it again today, on a bit of a meta level. I asked it for its opinion of biostars and it assumed I had some random context and went…
Comment: BED files by Pierre Lindenbaum 155k
have a look at options `-wa` and `-wb`
Comment: BED files by lela2314 • 0
That is what I am doing but it does not seem to be working. I am doing: bedtools intersect -a enhancer_muscle2.bed -b chip_tfbs.bed > …
Comment: The .vcf format: is there a file format better suited for the era of pangenomics by Pierre Lindenbaum 155k
shameless LLM : https://ai.tinybio.cloud/chat > The statement "VCF is the ideal file format for genomic information; no better file format…
Comment: BED files by Pierre Lindenbaum 155k
> I have been trying to solve what did you try ? (... and your answer will contain `bedtools intersect`)
Comment: The .vcf format: is there a file format better suited for the era of pangenomics by Vincent Laufer ★ 3.0k
@ram - this was as bit of a dirty tactic on my part: I stated it in the extreme to provoke disagreement. I agree with you - the irony is, d…
Comment: The .vcf format: is there a file format better suited for the era of pangenomics by Ram 39k
> .vcf is the ideal file format for genomic information; no better file format can be conceived whether in the era of singular linear refer…
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