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Recent Replies
Comment: Can I readmap short reads to rDNA references?
by
aniigodwinn
•
0
Still on this, the reads are from org a, org b, and environmental contaminants. I have a fairly good idea what org b might be but i need to…
Comment: fastq screen aligner no specified.
by
Ximena
•
0
Thank u so much, my OS is linux. I will try your advice.
Comment: In IGV is this a heterogeneous mutation or false call?
by
Tuck898
•
0
No worries, I can completely appreciate that. I am having investigations similar to a condition causes by the RYR2 gene and was wondering i…
Comment: In IGV is this a heterogeneous mutation or false call?
by
Pierre Lindenbaum
161k
> RYR1 underneath although I was originally looking at the RYR2 gene. Sorry to sound stupid but does this make sense to what I've previousl…
Comment: In IGV is this a heterogeneous mutation or false call?
by
Tuck898
•
0
When click the blat it brings me to chr19 and mentions the RYR1 underneath although I was originally looking at the RYR2 gene. Sorry to sou…
Comment: In IGV is this a heterogeneous mutation or false call?
by
Tuck898
•
0
Thanks for that! I'll try and have a look and see what is amiss if I can...
In your opinion what do you feel is wrong in my alignment from…
Comment: In IGV is this a heterogeneous mutation or false call?
by
Pierre Lindenbaum
161k
yeah.. look at that, there is something wrong in your alignment, many reads were mapped in a location but they are all clipped, so somethin…
Comment: Custom Reference panel creation for data imputation from .vcf files
by
analyst
▴
50
Hi [Kevin][1]!
I have 80 samples of GBS data. I have called variants through GATK pipeline. Now I have to perform imputation.
Do I need …
Comment: In IGV is this a heterogeneous mutation or false call?
by
Tuck898
•
0
Ah I've just found 'show soft clipped bases' and this is what comes up... how come it is all greyed out?
![enter image description here][…
Comment: In IGV is this a heterogeneous mutation or false call?
by
Tuck898
•
0
I've just displayed clipped bases and this is what it shows. Does this look right?
![enter image description here][1]
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