Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : today
all time
today
this week
this month
this year
21 results • Page
1 of 1
Sort: replies
Rank
Views
Votes
Replies
0
votes
5
replies
306
views
Telescope issue
Telescope
RNA-seq
updated 19 hours ago by
GenoMax
142k • written 1 day ago by
eleven11
• 0
1
vote
2
replies
254
views
Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x64-linux
blast
pssm
23 hours ago by
Nafi
• 0
1
vote
2
replies
195
views
POSSUM not working due to incompatible pssm file
fasta
pse-pssm
pssm
POSSUM
6 hours ago by
rianna.collins
• 0
1
vote
2
replies
109
views
Odd alignment question/finding
Alignment
updated 4 hours ago by
ATpoint
82k • written 9 hours ago by
poordumbsillyidiot
• 0
0
votes
1
reply
157
views
RNA editing sites based on DNA seq and RNA seq
RNA-editing
updated 17 hours ago by
Adam
▴ 30 • written 1 day ago by
Ahiad Chen Zion
• 0
0
votes
1
reply
139
views
GATK won't produce figures while analyzing covariates to generate 'recal_plots.pdf'
GATK
recalibration
updated 10 hours ago by
GenoMax
142k • written 14 hours ago by
mgranada3
▴ 30
0
votes
1
reply
531
views
Basic stats in hierfstat
Fst
stats
hierfstat
updated 9 hours ago by
mdav
• 0 • written 18 months ago by
Zoe
• 0
0
votes
1
reply
24
views
Problem with data downloaded from Short Reads Archive (SRA)
SRA
DADA2
metabarcoding
1 hour ago by
Begonia_pavonina
▴ 150
0
votes
1
reply
59
views
How to perform single cell multimodal integration using Seurat for Geo datasets
cell
analysis
multimodal
single
updated 4 hours ago by
ATpoint
82k • written 5 hours ago by
nithya
• 0
1
vote
1
reply
47
views
Discrepancy in read counts from fastq
reads
downsampling
fastq
count
updated 13 minutes ago by
GenoMax
142k • written 3 hours ago by
marco.barr
▴ 90
0
votes
1
reply
143
views
Subsetting and merging back Seurat Object brings different results
Seurat
1 hour ago by
Bine
▴ 60
0
votes
1
reply
94
views
Mutect2 for mitochondria variant discovery
mutect2
mitochondria
updated 18 hours ago by
Ram
43k • written 20 hours ago by
ernestine.kubi
• 0
0
votes
0
replies
37
views
Download eQTL data of one specific gene for all tissues from GTEx
eQTL
GTEx
6 hours ago by
Jeol
▴ 20
0
votes
0
replies
65
views
Tools to circularise the ion torrent bacterial genome assembly
iontorrent
bacteria
circularise
20 hours ago by
VITALA
• 0
0
votes
0
replies
51
views
Tassel 5 GBS: GBSSeqToTagDBPlugin producing empty database
GBS
Tassel5
15 hours ago by
meck
• 0
0
votes
0
replies
74
views
Looking for the best way to interpret these data
RNA-seq
ontology
GO
updated 14 hours ago by
Ram
43k • written 15 hours ago by
Oscar
▴ 10
0
votes
0
replies
17
views
Use of annotation of integrated Seurat object in single sample
Seurat
1 hour ago by
Bine
▴ 60
0
votes
0
replies
25
views
edgeR contrasts for analysis of reciprocal hybrid crosses - averaging, pooling, and comparing groups
edgeR
3 hours ago by
Rhiannon
• 0
0
votes
0
replies
41
views
Combining Methylation Microarray data from different platforms
Microarray
DNA
EPIC
450K
Methylation
8 hours ago by
James
▴ 10
0
votes
0
replies
18
views
Super ehancers
enhancers
1 hour ago by
Oburah
• 0
0
votes
0
replies
35
views
Successfully identified and Masked rpeats using RM. What Next?
sequence
annotation
repeatmasker
illumina
assembly
6 hours ago by
Vijith
▴ 30
21 results • Page
1 of 1
Recent Votes
Comment: Bacterial plasmid analysis
Unsupervised clustering on gene expression data
Answer: Bacterial plasmid analysis
Answer: Bacterial plasmid analysis
Define enhancer regions
A: how can i download human ribosomal reference ?
Answer: Bacterial plasmid analysis
Recent Locations •
All
United States,
just now
France,
just now
Marseille,
1 minute ago
United States,
1 minute ago
United Kingdom,
2 minutes ago
Italy,
4 minutes ago
United Kingdom,
9 minutes ago
Recent Awards •
All
Popular Question
to
massa.kassa.sc3na
▴ 600
Teacher
to
shenwei356
8.5k
Popular Question
to
Apex92
▴ 280
Popular Question
to
carlopecoraro2
★ 2.5k
Popular Question
to
Jeol
▴ 20
Popular Question
to
lefthandgergo
▴ 10
Popular Question
to
mgranada3
▴ 30
Recent Replies
Comment: Discrepancy in read counts from fastq
by
GenoMax
142k
Try `reformat.sh` from BBMap suite and its sampling parameters. You may get a third answer. Programs do some approximations so it is probab…
Comment: Problem with data downloaded from Short Reads Archive (SRA)
by
ATpoint
82k
One cannot help you with this. The error is from R, yet you show not a single line of R code.
Comment: Bacterial plasmid analysis
by
Daria
▴ 10
I am the colleague! My tool groups together plasmids based on two genetic distances: containment (how much of the smaller plasmid's sequenc…
Comment: Subsetting and merging back Seurat Object brings different results
by
Bine
▴ 60
Noone has an idea? Thank you!
Answer: Bacterial plasmid analysis
by
shenwei356
8.5k
My colleague has an unpublished tool for plasmid analysis (clustering), and it has really good results. You might have a try. https://githu…
Comment: Odd alignment question/finding
by
ATpoint
82k
bwa mem is not fully deterministic, see from the developer: https://www.biostars.org/p/238628/#238817
Comment: How to perform single cell multimodal integration using Seurat for Geo datasets
by
ATpoint
82k
It's funny that you ask because the paper that these data were used for is called `Integrated analysis of multimodal single-cell data` from…
Comment: Odd alignment question/finding
by
liorglic
★ 1.4k
I can't come up with an explanation, but two things you can try for debugging are: 1) look at the fastp stats - do they add up and make sen…
Answer: Bacterial plasmid analysis
by
Mensur Dlakic
★ 27k
If you put all your sequences in separate files but in the same directory, this program will build a cladogram based on average nucleotide …
Comment: POSSUM not working due to incompatible pssm file
by
rianna.collins
• 0
Thank you so much. I'm new to this and didn't realise there was a code option.
Answer: Is there a way to increase the automatic label text size in Cytoscape?
by
Scooter
▴ 280
Greetings, Are you saying that you can't use the size setting in the style tab? That should certainly work, as should the label size se…
Comment: Basic stats in hierfstat
by
mdav
• 0
Hi Zoe, did you find an answer for this? I am also getting the same error.
Comment: GATK won't produce figures while analyzing covariates to generate 'recal_plots.p
by
GenoMax
142k
Your cluster may be missing libraries etc to create the PDF plots (this looks like a cluster job submission) on your cluster. Did you check…
Comment: Post-imputation plot
by
kl
▴ 10
Ok yes I think my thought was that given these errors, I could remove the mismatches and flip the alleles which seem to need flipping based…
Comment: Bacterial plasmid analysis
by
nicole.kavanagh
• 0
I think I will perhaps use their predominant PlasmidFinder type to group plasmids together and create separate core phylogenies for each as…
Traffic: 2371 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6