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For protein binding microarrays, how do you extract an 8mer sequence from your 35mer sequence?

pbm chip-seq written 4.8 years ago by anjali.gopal91 • 50

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PWM Scan For Toxoplasma gondii

pwm pbm toxoplasma gondii transcription factors written 5.8 years ago by mercadocapote • 0 • updated 5.8 years ago by Kamil • 2.0k

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Recent Replies

C: Ratio of Log2FC by rpolicastro ♦ 3.2k
This seems like a poor (fatal) experimental design at first glance. Since protein and injection a...
C: Setup PHG with Singularity by zrm22 • 0
Hello, I mentioned to replace all of the **UNASSIGNED** ones with what I had posted. I removed ...
C: How to check if the diference between several logfc differential expression resu by Papyrus • 620
Maybe reading about **interaction** models in limma will help. See the sections 9.5 and 9.6 in th...
C: How to confirm if VCF file is normalized and Left aligned ? by vaibhash • 0
lib/utils.c file doesn't exists in the lib folder ... https://github.com/atks/vt/tree/master/lib...
C: Salmon BAM target length different to FASTA file sequence length by bdy8 • 20
Good morning Rob :) First of all thank you for the in depth response ! Thankyou for the more i...
C: Star index generation - 'std::bad_alloc' error by GenoMax ♦ 95k
Based on your original post it is hard to figure out how you are running this job. What scheduler...
C: Star index generation - 'std::bad_alloc' error by aranyak111 • 0
I am running the job from a job scheduler. If the cluster head node is generating an error how to...
C: SSPACE fasta output doesn't contain undefined nucleotides (NNNNNNN nucleotides by dukecomeback • 40
Hi, I also run into this situation, have you found the reason, could you give me some suggestions...
C: NCBI Eutils error forwarding request by GenoMax ♦ 95k
If you noticed the fasta headers in case of protein database searches they are different as compa...
C: NCBI Eutils error forwarding request by martin.damsbo • 0
You should get identical sequences regardless of which of the accessions used. This is also what ...
C: What does DESeq2 non symmetric MA plot mean in differential analysis?? (hi-chip) by ATpoint ♦ 44k
This looks like trended bias. I would guess that actually the entire plot would need to be shifte...
C: How to download as table from mycancergenome by Bastien Hervé ♦ 4.9k
Seems like no option is available for downloading a list of biomarkers. You can still asked them...

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