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Comment: How to get the ratio of allele counts from GATK derived VCF file?
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Comment: Z score
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Alright! Got you...
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Everything is already explained on this page, just read everything already written above. Specifically, [**this comment**][1]. [1]: htt…
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Good day everyone, Sorry I found a bit confusing and would appreciate if I could clarify on the calculation. I am using DESeq. My desire…
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logFCs are a bit difficult to cluster I think, because fold changes without stats attached to it are meaningless. They can be very big, due…
Comment: Z score
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Akash D
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Ok. However, if i perform it on log2FC, there wont be any control samples visible in my heatmap. Your answer is perfect.
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You can apply Z-scores on whatever you want, but it must make sense and depends on what you want to do. What is the context? See for exampl…
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Can Z score be applied on log2FC and then visualized? Alternatively, Can log2FC be converted to Z scores and then visualized as heatmap?
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Just for comparison, I deal with scRNA-seq daily and my workstation is a 12700k i7 with 128GB RAM and even this is actually more than I nee…
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- As others have said, 1-2 workstations are probably the way to go. - A Linux OS like Ubuntu is probably easiest and has best docs - RA…
Comment: How to get the ratio of allele counts from GATK derived VCF file?
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Ok, thank you for the reply. I will check out the DP field then.
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Hey! Would you consider building an API for the same? Is that something you have planned?
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