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Recent Replies
-
A: How to find CDS in Gene Profile? by
genomax ♦ 59k
You can find the CDS sequence [of that gene here][1]. You can find that cross reference on the [U...
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C: High no feature counts in ht-seq counts by
eozcan • 0
I dowloaded them both from ncbi from same genome.
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C: High no feature counts in ht-seq counts by
eozcan • 0
stranded option is reverse, I specified it. It is there. What else is incomplete I didnt understa...
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A: Genotype Extraction Format from VCF file by
WouterDeCoster ♦ 35k
While your question is unclear, if you select lines from your vcf and keep the header intact then...
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C: How to pass MAF file to dNdScv to detect cancer driven genes? by
zx8754 ♦ 6.0k
Could you provide you example "MAF-file"?
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C: "GOplot" and problem with making an integrated matrix by
zx8754 ♦ 6.0k
They are just R data file formats, once you read them in they become R objects. Then you can comp...
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C: Analysis Without Replicates by
stevenmarkgalway • 0
Thanks for your feedback guys, much appreciated. Yeah, I have absolutely no replicates and yes th...
-
C: Analysis Without Replicates by
piyushjo • 80
Didn't mean to suggest that as the correct method, but rather a method to get top genes to valida...
-
C: Analysis Without Replicates by
ATpoint ♦ 10k
Don’t ever duplicate results to get pseudoreplicates. See https://www.biostars.org/p/352699/
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C: VCF file phasing by SHAPEIT by
Kevin Blighe ♦ 33k
I would contact the authors directly. They have a duty to follow-up on these things if they are s...
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C: How to incorporate interaction between two alleles in ApoE for Alzheimer's polyg by
Kevin Blighe ♦ 33k
What about creating a merged variable for rs7412 and rs429358 (4 possible values considering 2 ge...
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A: How to download a list of cases containing specific cnvs from TCGA? by
Kevin Blighe ♦ 33k
The TCGA copy number data is arguably the most annoying because it has been processed and re-proc...
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