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prioritization according to phenotype description

gene prioritization prioritization written 3.4 years ago by Emma • 10 • updated 6 months ago by Michael Dondrup ♦ 45k

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Tool: Phevor: Phenotype Driven Variant Ontological Re-Ranking Tool

interpretation prioritization phevor vaast tool written 4.7 years ago by Moses M. Feaster • 30 • updated 13 months ago by trustedagent1 • 0

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I need some sets of pathogenic variants related to any mendelian disorder.

prioritization variant written 22 months ago by sktbanerjee1 • 30 • updated 22 months ago by WouterDeCoster ♦ 37k

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Trait specific SNP prioritization

gwas prioritization snp enrichment written 23 months ago by LNA • 30

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Candidate Gene Prioritization

prioritization seed genes clustering written 2.5 years ago by nkausthu • 20 • updated 2.5 years ago by unksci • 150

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Recent Replies

C: ADVOCATE R package by David_emir • 320
[It is here][1], Its Github repository. [1]: https://github.com/califano-lab/ADVOCATE
C: Outputting strain name on prokka annotation by genomes_and_MGEs • 0
Yeah, already tried with many approaches but couldn't manage. For example, I tried this for F in...
C: Looking for exercises on protein structure modelling by genomax ♦ 64k
There are plenty of learning resources available at [PDB learn page][1]. If you use ideas/materia...
C: Diploid genome gene annotation by lieven.sterck ♦ 4.2k
Is the species you're working on (highly) heterozygotic? If not then dipSPADES is unfortunately n...
C: Outputting strain name on prokka annotation by genomax ♦ 64k
You can do that yourself. Should be a good exercise.
C: CWL: nameext not returning expected array by Tom • 200
Using `cwltool 1.0.20190228155703` and the `biostars_365953-workaround.cwl`, i still don't get fi...
A: Doing MSA for DNA to catch the variations in the sequence by Bastien Hervé ♦ 3.7k
[MultAlin][1] has a similar output, copy your sequences in the text box then in `Presentation opt...
A: Avoid intersection of adjacent regions in GenomicRanges::intersect() by david.mas • 0
Just found that I should be able to do it with the `pintersect` function from a Pair object. In...
C: Looking for exercises on protein structure modelling by jachymb • 0
Something interactive is much preferred.
C: Outputting strain name on prokka annotation by genomes_and_MGEs • 0
Thanks, this should work! Could you please convert this into a loop? Considering I have the strai...
A: model design in rna seq - deseq2 by tw617 • 30
Your method of adjusting the p-value could be too stringent. Look into the default settings of DE...
C: Doing MSA for DNA to catch the variations in the sequence by ismaeilmohamed304 • 10
Thanks to ur support :)

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