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<prev • 29 results • page 1 of 1 • next >
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175
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Use Salmon to annotate a Sam file
alignment quantification salmon rna-seq written 3 months ago by Florian Bernard • 60 • updated 3 months ago by ATpoint ♦ 24k
1
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1
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337
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1
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Transcript quantification using the reference transcriptome(gencode) and the raw RNA-Seq reads without mapping it to reference genome.
reads quantification transcript rna-seq sequencing written 7 months ago by Glory Basumata • 140 • updated 7 months ago by JC ♦ 8.7k
6
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1
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334
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1
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Writing a batch script for analyzing RNA-Seq data
alignment quantification rna-seq batch script written 7 months ago by mohammedtoufiq91 • 70 • updated 7 months ago by WouterDeCoster ♦ 41k
1
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1
answer
381
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1
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RNA-seq analysis data analysis pipeline
quantification fc rna-seq alignment expression written 8 months ago by mohammedtoufiq91 • 70 • updated 8 months ago by Bastien Hervé ♦ 4.4k
5
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2
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419
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2
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The optimal minMQS parameter in featureCounts for RNA-Seq quantification
minmqs quantification featurecounts rna-seq written 8 months ago by Gary • 450 • updated 8 months ago by Gordon Smyth • 990
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410
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1
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Quantifying repetitive elements in RNA-seqs
quantification repetitive elements rna-seq written 12 months ago by lkianmehr • 30 • updated 12 months ago by Martombo • 2.5k
13
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2
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1.2k
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6 follow
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Salmon Quantification for RNA-seq Read Pairs with Different Lengths
quantification salmon rna-seq written 13 months ago by ATpoint ♦ 24k
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2
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1.5k
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5 follow
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Cufflink, where is the raw gene count?
quantification cufflink rna-seq cuffquant written 2.1 years ago by ha.hassanzadeh • 0 • updated 13 months ago by magdalena1236 • 10
1
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1
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291
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1
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Is possible to quantify the RNAPOLII levels on all the annotated genes using biwgiw files?
annotation rnapol quantification bigwig written 14 months ago by Lila M • 800 • updated 14 months ago by venu ♦ 6.3k
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1
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489
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1
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Galaxy tool for quantifying RNAseq data
quantification galaxy rna-seq written 16 months ago by kml • 20
2
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0
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453
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error running RSEM in Galaxy
quantification rna-seq rsem written 16 months ago by kml • 20
1
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what is the corresponding proteome or transcriptome (cDNA fasta in Ensembl) file in NCBI?
assembly quantification kallisto rna-seq index written 16 months ago by SMILE • 100
4
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1
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535
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1
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quantification RNAseq and normalization
normalization quantification deseq2 rna-seq written 17 months ago by kml • 20
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452
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0
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What happened to my mapping IDs in the matrix counts?
R quantification mapping rna-seq written 20 months ago by Pin.Bioinf • 260
0
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1
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674
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1
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Cufflinks output fewer features than the annoation file.
quantification cufflinks rna-seq written 23 months ago by --panda-- • 30
1
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1
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849
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1
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HTSeq funny output
htseq quantification rna-seq written 23 months ago by --panda-- • 30
7
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2
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2.1k
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2
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error when run tximport for salmon files
quantification r error txtimport salmon rna-seq written 2.0 years ago by Lila M • 800
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655
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read simulation and quantification
fasta simulation quantification rna-seq written 2.1 years ago by snishtala03 • 20
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0
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555
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% Alternative Splicing
genome quantification human alternative splicing written 2.1 years ago by andreiareis1987 • 30
1
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1
answer
897
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1
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Some basic question on quantification of RNA-seq mapped reads
alignment stringtie quantification rna-seq hisat written 2.2 years ago by Hamid • 10
0
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476
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How to get unquantified reads with featurecounts
quantification written 2.3 years ago by Chynoki • 0
0
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1
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546
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1
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RNAseq transcript quantification: how to deal with different number of genes in host organism?
sailfish quantification rna-seq transcripts R written 2.5 years ago by Lina F • 160 • updated 2.5 years ago by h.mon ♦ 27k
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6.2k
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How do you normalize Transcript per Million TPM to compare between samples ?
tpm quantification salmon star rna-seq written 2.8 years ago by ZheFrench • 250
9
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2
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5.1k
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2
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htseq-count cannot find pysam
htseq htseq-count quantification rna-seq myposts written 3.8 years ago by Gary • 450 • updated 3.5 years ago by Bioinformatist Newbie • 240
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1.1k
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Compare same sample but different library preparation
alignment quantification rna-seq library written 4.1 years ago by mat.lesche • 0
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1.6k
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0
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Best practice for GWAS RNA-seq quantification
gwas ngs quantification rna-seq rpkm written 4.6 years ago by Zhenyu Zhang • 260
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0
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1.2k
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iTRAQ Quantification Example
quantification itraq written 4.9 years ago by jgbradley1 • 100
2
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1
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2.0k
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1
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Best way to calculate p-value for protein regulations
proteomics p-value quantification lc-ms written 4.9 years ago by alex • 0 • updated 4.9 years ago by Laurent • 1.6k
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How to test the quality of RNA-seq gene expression data ?
genome quantification rna-seq sequencing written 5.0 years ago by jack • 790 • updated 5.0 years ago by mikhail.shugay ♦ 3.3k
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