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<prev • 34 results • page 1 of 2 • next >
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Denovo transcriptomics quantification
quantification rna-seq denovo written 6 weeks ago by mr.shubhamvermaji • 0
1
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107
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IsoEM trying to run quantification but just prints out manual
quantification rna-seq isoem isoem2 written 3 months ago by mar77 • 20 • updated 11 weeks ago by Biostar ♦♦ 20
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99
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IsoEM2 - quantification of RNAseq alignments ERROR
alignment quantification isoem2 rna-seq written 3 months ago by mar77 • 20
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113
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ROC for a family of repeated variables
quantification rna-seq written 5 months ago by ognjen011 • 200
2
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1
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201
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1
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How to perform iteration task inside a docker image (RNA-seq analysis)
quantification docker rna-seq written 8 months ago by dodausp • 140 • updated 8 months ago by Barry Digby • 500
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3
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6.0k
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3
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htseq-count cannot find pysam
htseq htseq-count quantification rna-seq myposts written 4.9 years ago by Gary • 480 • updated 9 months ago by Payal • 90
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1
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359
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1
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Use Salmon to annotate a Sam file
alignment quantification salmon rna-seq written 16 months ago by Florian Bernard • 70 • updated 16 months ago by ATpoint ♦ 40k
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1
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655
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1
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Transcript quantification using the reference transcriptome(gencode) and the raw RNA-Seq reads without mapping it to reference genome.
reads quantification transcript rna-seq sequencing written 19 months ago by Glory Basumata • 140 • updated 19 months ago by JC ♦ 12k
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1
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697
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1
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Writing a batch script for analyzing RNA-Seq data
alignment quantification rna-seq batch script written 20 months ago by mohammedtoufiq91 • 110 • updated 20 months ago by WouterDeCoster ♦ 44k
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1
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758
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1
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RNA-seq analysis data analysis pipeline
quantification fc rna-seq alignment expression written 20 months ago by mohammedtoufiq91 • 110 • updated 20 months ago by Bastien Hervé ♦ 4.8k
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2
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892
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2
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The optimal minMQS parameter in featureCounts for RNA-Seq quantification
minmqs quantification featurecounts rna-seq written 21 months ago by Gary • 480 • updated 21 months ago by Gordon Smyth • 2.0k
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1
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796
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1
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Quantifying repetitive elements in RNA-seqs
quantification repetitive elements rna-seq written 2.0 years ago by lkianmehr • 50 • updated 2.0 years ago by Martombo • 2.6k
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2
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6 follow
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Salmon Quantification for RNA-seq Read Pairs with Different Lengths
quantification salmon rna-seq written 2.1 years ago by ATpoint ♦ 40k
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5 follow
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Cufflink, where is the raw gene count?
quantification cufflink rna-seq cuffquant written 3.1 years ago by ha.hassanzadeh • 0 • updated 2.2 years ago by magdalena1236 • 10
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1
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458
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1
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Is possible to quantify the RNAPOLII levels on all the annotated genes using biwgiw files?
annotation rnapol quantification bigwig written 2.2 years ago by Lila M • 860 • updated 2.2 years ago by venu ♦ 6.7k
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643
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1
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Galaxy tool for quantifying RNAseq data
quantification galaxy rna-seq written 2.4 years ago by kml • 20
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688
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error running RSEM in Galaxy
quantification rna-seq rsem written 2.4 years ago by kml • 20
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what is the corresponding proteome or transcriptome (cDNA fasta in Ensembl) file in NCBI?
assembly quantification kallisto rna-seq index written 2.4 years ago by SMILE • 130
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1
answer
868
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1
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quantification RNAseq and normalization
normalization quantification deseq2 rna-seq written 2.4 years ago by kml • 20
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627
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What happened to my mapping IDs in the matrix counts?
R quantification mapping rna-seq written 2.7 years ago by Pin.Bioinf • 270
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877
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1
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Cufflinks output fewer features than the annoation file.
quantification cufflinks rna-seq written 3.0 years ago by --panda-- • 30
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1
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1.1k
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1
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HTSeq funny output
htseq quantification rna-seq written 3.0 years ago by --panda-- • 30
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2
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3.1k
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6 follow
2
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error when run tximport for salmon files
quantification r error txtimport salmon rna-seq written 3.0 years ago by Lila M • 860
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790
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read simulation and quantification
fasta simulation quantification rna-seq written 3.1 years ago by snishtala03 • 40
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697
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% Alternative Splicing
genome quantification human alternative splicing written 3.1 years ago by andreiareis1987 • 30
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1.1k
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1
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Some basic question on quantification of RNA-seq mapped reads
alignment stringtie quantification rna-seq hisat written 3.2 years ago by Hamid • 10
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625
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How to get unquantified reads with featurecounts
quantification written 3.4 years ago by Chynoki • 0
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1
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689
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1
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RNAseq transcript quantification: how to deal with different number of genes in host organism?
sailfish quantification rna-seq transcripts R written 3.5 years ago by Lina F • 190 • updated 3.5 years ago by h.mon ♦ 31k
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How do you normalize Transcript per Million TPM to compare between samples ?
tpm quantification salmon star rna-seq written 3.8 years ago by ZheFrench • 300
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Compare same sample but different library preparation
alignment quantification rna-seq library written 5.1 years ago by mat.lesche • 0
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