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Check whether we have RNAseq raw counts
R rna-seq written 1 hour ago by mi_kappa • 0 • updated 46 minutes ago by ATpoint ♦ 32k
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1
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28
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1
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How to know the ideal number of clusters for my RNASeq data?
cluster rna-seq written 1 hour ago by fcamus • 0 • updated 1 hour ago by ATpoint ♦ 32k
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2
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52
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2
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Inter-RNAseq dataset operations?
rna-seq written 14 hours ago by aaragak1 • 0 • updated 3 hours ago by kristoffer.vittingseerup • 3.0k
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1
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55
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1
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Download NCBI GEO dataset
geo gse rna-seq written 16 hours ago by DataFanatic • 150 • updated 5 hours ago by wm • 370
3
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1
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86
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1
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Getting rid of spaces in txt file with nucleotide sequences
gene next-gen rna-seq written 1 day ago by stambukf • 10
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1
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69
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1
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how I can download both of the two files from ebi
rna-seq written 10 hours ago by yueli7 • 110 • updated 10 hours ago by genomax ♦ 80k
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49
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Clusterprofiler error: No gene can be mapped
R clusterprofiler go enrichment go rna-seq written 16 hours ago by tianshenbio • 10
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1
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69
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1
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Run Cellranger Count with Novogene fastq files
alignment rna-seq sequencing written 20 hours ago by rf3x • 0 • updated 17 hours ago by swbarnes2 ♦ 7.5k
5
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1
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81
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1
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Store a scRNA-seq ~gene expression "matrix.txt" as a "matrix.mtx" in R
R next-gen rna-seq written 18 hours ago by choijamtsm • 20 • updated 18 hours ago by Kevin Blighe ♦ 56k
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1
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92
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5 follow
1
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Reformat my txt file
gene ontology rna-seq written 1 day ago by tianshenbio • 10
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8 follow
1
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Tool: Arriba: Fast and accurate gene fusion detection from RNA-Seq data
variant calling tool cancer fusion rna-seq gene written 2.1 years ago by uhrigs • 100 • updated 19 hours ago by gratefulheart946 • 0
2
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1
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40
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1
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edger and continuous variables
rna-seq edger written 23 hours ago by wolideamare • 0 • updated 23 hours ago by genomax ♦ 80k
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2
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1.1k
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2
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featureCounts with pseudobam
featurecounts salmon rna-seq pseudobam kallisto written 3.2 years ago by mccormack • 40 • updated 1 day ago by ATpoint ♦ 32k
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1
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55
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1
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Processing bulk RNA-seq TMM matrix to get DEGs
rna-seq written 1 day ago by Dataminer • 2.7k • updated 1 day ago by ATpoint ♦ 32k
1
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1
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35
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1
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Could not shrink after adjusting factor level reference in DESeq2
deseq2 rna-seq lfcshrink written 1 day ago by jfo • 20
1
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3
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105
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3
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How reliable are the ensembl transcript isoforms?
ensembl rna-seq isoform written 4 days ago by simplitia • 30 • updated 1 day ago by Astrid_Ensembl • 290
0
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1
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46
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1
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Cell line RNA differentially expression gene
rna-seq written 1 day ago by 9521ljh • 10 • updated 1 day ago by Kevin Blighe ♦ 56k
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1
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1
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How to trim illumina reads for poly-A tail and mini-exon presence
assembly rna-seq written 4.0 years ago by Buffo • 1.8k • updated 1 day ago by Biostar ♦♦ 20
1
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0
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60
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0
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bam file: get date that alignment was run
alignment rna-seq sequencing written 1 day ago by brismiller • 20
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0
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45
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0
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mapIDs function not obtaining all GOIDs for organism
R go rna-seq written 1 day ago by theodore.killian • 0
0
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48
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0
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TCGA normal vs control sample
tcga rna-seq written 1 day ago by manali.rupji • 10
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2
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68
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2
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patterns of expression in RNA Seq
rna-seq written 2 days ago by R • 20 • updated 1 day ago by Friederike ♦ 5.4k
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48
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0
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Find the genes that are commonly expression between 3 tissue
R rna-seq written 1 day ago by jihed.chouaref • 0 • updated 1 day ago by genomax ♦ 80k
1
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1
answer
60
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1
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Cellranger on mac?
alignment rna-seq written 1 day ago by aliceha23 • 0 • updated 1 day ago by ATpoint ♦ 32k
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42
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0
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StringTie required filtered BAM
gene annotation rna-seq assembly written 1 day ago by Ric • 290
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1
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67
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1
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Differential expression testing in Seurat
R rna-seq seurat written 2 days ago by suvratha • 40 • updated 1 day ago by ATpoint ♦ 32k
2
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1
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69
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1
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which matrix should NMF use in single cell RNA seq data to find diferential gene program?
rna-seq written 2 days ago by hq.huang11.6 • 0 • updated 1 day ago by Jean-Karim Heriche ♦ 22k
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37
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0
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Using RNA-seq to measure SCU
synonymous codon usage rna-seq mapping written 1 day ago by 2405592M • 60
2
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4
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270
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4
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Problem with ks_debruijn4 on large dataset in KisSplice
software error rna-seq kissplice written 6 months ago by david.b.rombaut • 0 • updated 2 days ago by vincent.lacroix • 130
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1
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62
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1
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Filtering the genes based on cpm in edgeR
rna-seq edger written 2 days ago by elb • 170
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