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Append TPM value to sequence header in FASTA file
fasta tpm rna-seq transcripts linux written 22 hours ago by molly77 • 10 • updated 1 minute ago by JC ♦ 9.5k
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Correlating RNA-seq and ChIP-seq data? Concurrence frequencies as metric?
chip-seq rna-seq sequencing written 6 minutes ago by stellaparker • 10
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edgeR: DGElist error reported ' NA counts not allowed'.
rna-seq written 1 hour ago by amysays • 0 • updated 1 hour ago by lieven.sterck ♦ 6.9k
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Small RNA Seq Analysis for newcomers...
rna-seq written 1 hour ago by tushar131189 • 0
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Scanpy vs DeSeq for single cell RNASeq DE gene analysis
rna-seq written 3 hours ago by robert.murphy • 10
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Rsubread: ERROR: cannot finish the SAM file
rsubread rna-seq written 15 months ago by TheCheshireCat • 0 • updated 4 hours ago by mariana3131 • 0
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Stringtie2: how to interpret conflicts between results
de novo annotation long-reads rna-seq written 5 hours ago by NathL • 20
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42
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quires about fpkm and log2fold change
R next-gen rna-seq written 5 hours ago by Balatheskulter • 0
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7 follow
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Forum: RNASeq user experience with Novogene?
forum rna-seq written 20 months ago by ivanarg2 • 40 • updated 6 hours ago by i.sudbery ♦ 7.0k
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mirdeep2 mapped reference error
rna-seq mirdeep2 written 2 days ago by jomagrax • 20
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No mapping results after loading my own blast xml file.
rna-seq blast2go blast omicsbox written 7 hours ago by 2822462298 • 30
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1
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visualizing RNAseq read coverage in Ensembl genome browser
ensembl ngs wig rna-seq written 5.0 years ago by tospo • 40 • updated 15 hours ago by Biostar ♦♦ 20
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99
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5 follow
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Downstream RNA seq analysis
rna-seq written 22 hours ago by Payal • 40 • updated 20 hours ago by dsull • 900
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129
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Looking for perspective on a odd MA plot / skewed data
patch-seq rna-seq written 5 weeks ago by jevanveen • 20 • updated 21 hours ago by Biostar ♦♦ 20
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45
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Entrez to coordonnates / BED
genome gene rna-seq written 23 hours ago by fjaver74 • 0
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40
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Co-expression Network on Cytoscape between miRNA-mRNA and mRNA-mRNA
genome assembly alignment rna-seq sequencing written 23 hours ago by yronimuz • 0
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1
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1
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bcl2fastq results in Poly-N in R1
scrna-seq single-cell paired-end bcl2fastq rna-seq written 1 day ago by Assa Yeroslaviz • 1.3k • updated 1 day ago by genomax ♦ 78k
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feature selection using random forest
featureselection R randomforest rna-seq written 1 day ago by newbie • 70 • updated 1 day ago by dsull • 900
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80
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Run RNA-seq analysis with selected targets
alignment cufflinks rna-seq written 1 day ago by dodausp • 130
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cuffdiff output table
assembly next-gen rna-seq R written 1 day ago by Balatheskulter • 0 • updated 1 day ago by zx8754 ♦ 9.0k
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How do determine the ratio of mRNA:rRNA:ncRNA in an RNA-seq dataset?
alignment rna-seq written 1 day ago by mb314 • 0
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Time series analysis for RNA-seq paired samples
time series analysis timeseriesexperiment rna-seq written 1 day ago by essief • 0
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Trinity RSEM TMM matrix
assembly trinity rna-seq rsem count written 1 day ago by ysbaek • 0
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1
answer
66
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1
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How do I change size of gene names displayed on plotHeatmap from scater R Package
gene R next-gen rna-seq written 1 day ago by gsr9999 • 120 • updated 1 day ago by jared.andrews07 ♦ 4.9k
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Differential expression of different sequence runs - Trinity?
trinity de tool rna-seq written 1 day ago by rebecca.mekler • 0 • updated 1 day ago by Asaf ♦ 7.0k
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6 follow
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How to get 1 top hit only for each query in blastx
blastx blast rna-seq written 2 days ago by 2822462298 • 30 • updated 1 day ago by Fatima • 350
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How to correctly generate alignment Stat in RNA-Seq
alignment rna-seq sequencing written 2 days ago by rohitsatyam102 • 60 • updated 1 day ago by brianj.park • 10
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102
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Kallisto: Impact of chosen reference transcriptome on the resulting TPMs
kallisto rna-seq written 2 days ago by iraun • 3.7k
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60
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Cutdapt for batch processing ?
genome rna-seq sequencing written 2 days ago by sunnykevin97 • 30 • updated 2 days ago by Asaf ♦ 7.0k
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RNA velocity arrows means
R tool rna-seq written 2 days ago by alpha09 • 10 • updated 2 days ago by ATpoint ♦ 29k
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