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genomax ♦ 46k
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Recent Replies
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A: Making reference fasta file from aligned sam file or bed file by
d-cameron • 1.5k
> Is that right approach becuase many amplicons have different locations on same chromosome an...
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C: Poor Output from Spades with High Coverage Input Data by
h.mon ♦ 13k
Is this DNAseq or RNAseq?
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C: strand information for SNPs from VCF file (convert into IMPUTE format) by
miaowzai • 40
I found a tool to do this: https://github.com/biocore-ntnu/snpflip
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C: Sample outlier detection in DESeq2 by
genomax ♦ 46k
For future reference : https://www.biostars.org/p/309884/
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C: Using rna-STAR on Amazon EC2 instance by
marypthomas88 • 0
Thanks for the feedback. Yes, our pseudo-genome seems small and we assumed we could load this in ...
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C: Poor Output from Spades with High Coverage Input Data by
genomax ♦ 46k
Not answering your question but you may want to give `tadpole.sh` from [BBMap suite][1] a try. It...
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C: Making reference fasta file from aligned sam file or bed file by
genomax ♦ 46k
Check `FastaAlternateReferenceMaker` ([part of GATK toolkit][1]) for generating reference. [1...
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C: Graduate student going into Bioinformatics looking for a new personal laptop. Ma by
genomax ♦ 46k
Rather than a VM you should use [Linux subsystem for Win 10][1]. It is free and provides a native...
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C: Count the number of reads for multiple genomic locations on different (not all) by
vkgaur25 • 0
This is what happens after no sleep at all. I am so stupid. Thanks a lot @genomax
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A: Graduate student going into Bioinformatics looking for a new personal laptop. Ma by
marypthomas88 • 0
I am new to bioinformatics; I come from a unix computational science background. When I work, I t...
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C: UBERON. A way to retrieve relationships? by
Solowars • 30
Hi Kevin, tudo bom? I was thinking of an automatic way to extract the hierarchy of a list of iden...
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C: UBERON. A way to retrieve relationships? by
Kevin Blighe ♦ 17k
Boa noite, conheço bem a Porto Alegre. You just want to extract the hierarchy of a specific UBERO...
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