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<prev • 7,144 results • page 1 of 239 • next >
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Any suggestions upon re-quantifying bam files downloaded from EBI-EGA archive with Salmon?
bedtools salmon samtools rna-seq written 27 minutes ago by vchris_ngs • 4.0k
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Which package to use for RPKM/FPKM RNA-seq counts?
rna-seq written 3 hours ago by hafiz.talhamalik • 0 • updated 29 minutes ago by Renesh • 870
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featureCounts reports zero counts when using GTF Repeatmasker track from UCSC and Bowtie2 SAM mapped RNA-seq reads
software error rna-seq written 1 hour ago by Gema Sanz • 30
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115
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5 follow
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Technical replicates in RNAseq
technical_replicates rna-seq written 3 hours ago by grant.hovhannisyan • 250 • updated 3 hours ago by Macspider • 1.4k
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next step after differential expression analysis
rna-seq written 6 hours ago by Pappu • 1.8k • updated 5 hours ago by geek_y ♦ 8.0k
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GFF3 file incompatibilities (source: BRAD)
gff3 gtf star rna-seq formatting error written 15 hours ago by dejong.grant • 0
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topGo Error in .local(.Object, ...) : allGenes must be a factor with 2 levels
R topgo rna-seq edger written 1 day ago by Ric • 130
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96
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1
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Xenopus genome files for RNAseq
rna-seq written 17 hours ago by rob.costa1234 • 110 • updated 17 hours ago by Ron • 600
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144
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6 follow
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Need help reading FASTQ file
rna-seq written 22 hours ago by sarmademad • 0 • updated 19 hours ago by shoujun.gu • 190
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Forum: [Please share] How do you keep your NGS data analysis methods/ strategies up to date? (e.g. Data sub-groupping, datasets overlapping, etc.)
ngs chip-seq forum rna-seq written 1 day ago by chiefcat • 70 • updated 19 hours ago by Russ • 10
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Length distribution of PacBio RNA-seq
long reads rna-seq pacbio written 1 day ago by tunl • 40
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102
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RNA strucuture prediction
rna-seq written 22 hours ago by bandanaschapagain • 20
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95
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RNA-editing pipeline for miRNAs
next-gen rna-editing mirna-editing rna-seq written 23 hours ago by sombrajo92 • 0
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96
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Analysis ready RNA Seq repository
online repository rna-seq resource written 23 hours ago by kakaru • 0
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1
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differentially expressed genes
rna-seq written 1 day ago by lilly • 0 • updated 23 hours ago by Kevin Blighe • 930
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1
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104
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1
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How to manipulate a gff or gtf file manually?
genome next-gen rna-seq written 1 day ago by Javad • 0 • updated 23 hours ago by shoujun.gu • 190
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20 follow
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Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 4.5 years ago by biorepine • 1.2k • updated 23 hours ago by Renesh • 870
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196
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How to find target genes of long non coding RNA
rna-seq written 22 days ago by bhuwankhatri11 • 10 • updated 1 day ago by WouterDeCoster ♦ 21k
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1
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topvariance genes from deseq2 output and heatmap
R rna-seq written 1 day ago by krushnach80 • 160
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5 follow
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Selecting genes that best separate between two groups
ttest feature selection limma filtering rna-seq written 1 day ago by lirongrossmann • 10 • updated 1 day ago by Kevin Blighe • 930
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Why are gene expression phylogenies and the structure of hierarchical clustering so different?
rna-seq written 1 day ago by haoyan14ioz • 0
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RNASeq TCGA data
tcga rna-seq written 5 days ago by elizabethR • 30
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topGO allGenes argument
R topgo rna-seq edger written 1 day ago by Ric • 130 • updated 1 day ago by e.rempel • 430
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Gene annotation from genomic features
annotation chip-seq rna-seq written 1 day ago by chiefcat • 70
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2
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Tool for predicting RNA binding protein
rna-seq rna-binding proteins written 2.6 years ago by EVR • 430 • updated 1 day ago by liushiyong • 0
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retrieving attributes of a list generated by read.fasta()
R rna-seq written 2 days ago by lech.kaczmarczyk • 0
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136
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Seq. depth for DE analysis
rna-seq "de analysis" "seq. depth" written 2 days ago by grant.hovhannisyan • 250 • updated 1 day ago by Renesh • 870
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114
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Most variable gene from the differentially expressed genes
R rna-seq written 1 day ago by krushnach80 • 160 • updated 1 day ago by Satyajeet • 980
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Is it possible to import a count table into MEGAN?
featurecounts rna-seq bwa megan written 2 days ago by victor.gambarini • 20
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5 follow
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Job: [not available anymore] Junior bioinformatician (Bsc or Msc) - Dana Farber Cancer Institute, Boston, MA, USA
python chip-seq job R rna-seq linux written 7 months ago by rubendries • 10
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