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2
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15
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5 follow
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Merge .bam files by groups of lanes
bam samtools job rna-seq written 32 minutes ago by elb • 100 • updated 11 minutes ago by Ram ♦ 15k
0
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2
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103
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2
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Need help in GSEA analysis and interpretation
barcode plot gsea rna-seq written 12 hours ago by vinayjrao • 100
6
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1
answer
73
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5 follow
1
answer
TopHat v2.1.1- Warning: TopHat did not find any junctions in GTF file
gtf tool rna-seq written 8 hours ago by Munmun • 0 • updated 7 hours ago by genomax ♦ 51k
3
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1
answer
58
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1
answer
How to get ungapped single-end reads from the STAR output bam file?
ungapped star single-end rna-seq written 9 hours ago by caggtaagtat • 240 • updated 8 hours ago by Pierre Lindenbaum ♦ 110k
3
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1
answer
55
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1
answer
Remove secondary alignments in RNA-seq analysis?
alignment rna-seq hisat2 written 9 hours ago by nanoide • 10
8
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3
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124
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9 follow
3
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RNASeq DGE : Kallisto-sleuth Vs Ballgown
next-gen rna-seq written 5 days ago by Ankita.narang86 • 0
0
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0
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42
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0
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TCGA - Correlation between gene expression and CNV
R tcga correlation rna-seq cnv written 10 hours ago by rina • 0
0
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1
answer
101
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1
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Plot norm counts for all genes in two conditions
rna-seq written 2 days ago by vkgaur25 • 30 • updated 17 hours ago by Kevin Blighe ♦ 24k
2
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1
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71
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1
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what logFC or adj-p value cutoff should be chosen when the number of samples in one of the conditions is too small?
deseq2 small number of normal samples rna-seq written 1 day ago by nazaninhoseinkhan • 240 • updated 18 hours ago by Kevin Blighe ♦ 24k
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64
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0
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Tophat2 Aligning extremely short reads
tophat alignment rna-seq sequencing written 19 hours ago by biogirl04 • 0
1
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1
answer
87
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1
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Using data.matrix while reading raw counts from a csv file for DESeq2 analysis
rna-seq written 1 day ago by vkgaur25 • 30 • updated 22 hours ago by Kevin Blighe ♦ 24k
4
votes
3
answers
132
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6 follow
3
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Statistical test for replicates
rna-seq written 1 day ago by JC • 0 • updated 1 day ago by Michele Busby • 1.8k
2
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2
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77
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2
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Bcl2fastq avoid addition of barcode to header
rna-seq written 1 day ago by GSAENZDEPIP • 10 • updated 1 day ago by swbarnes2 ♦ 3.8k
1
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1
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85
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1
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Pheatmap question, how to draw a heatmap with pheatmap when you have 200 DEG to show on the heatmap?
rna-seq written 1 day ago by soheilazareie • 10 • updated 1 day ago by Kevin Blighe ♦ 24k
0
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46
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0
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Alternative tools to SplitNCigarReads
rna-seq written 1 day ago by yelekley7 • 0
2
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0
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173
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0
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What is the prefered script for HISAT2 genome-guided using draft genome? --dta or --exon ?
genome guided alignment rna-seq hisat2 written 13 days ago by Farbod • 3.1k
0
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1
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60
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1
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Assigning Fold Change for Polyester
rna-seq differential expression fold change written 1 day ago by priyankamaripuri • 40 • updated 1 day ago by h.mon ♦ 16k
3
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175
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0
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my file do not have duplicates, but it still shows duplicate are not allow
R rna-seq written 24 days ago by mikysyc2016 • 10 • updated 1 day ago by Biostar ♦♦ 20
6
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3
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134
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6 follow
3
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how to produce plots like this in R
rna-seq written 1 day ago by Javad • 20 • updated 1 day ago by cpad0112 • 7.6k
1
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0
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97
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0
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Heatmap: edgeR counts and DEG
rna-seq edger heatmap written 4 days ago by RiNG • 10
0
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0
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87
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0
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DE for a de novo species
rna-seq written 1 day ago by rnaseq2018 • 0
0
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2
answers
118
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2
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filtering a z score file
rna-seq written 3 days ago by kanwarjag • 890 • updated 1 day ago by rob.costa1234 • 150
4
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0
answers
109
views
0
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How to interpret PCA output statistically and biologically
gene R rna-seq written 4 days ago by BIOAWY • 40 • updated 1 day ago by zx8754 ♦ 4.6k
2
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0
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90
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Error running the rMATS for splicings
rmats ngs rna-seq written 11 days ago by archie • 50 • updated 2 days ago by Biostar ♦♦ 20
0
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160
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Could you please share links to cancer datasets and to Python or R packages to analyze them?
R next generation seq python rna-seq cancer written 2 days ago by tfhahn • 40
2
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0
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111
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0
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Large number of overlapped genes/transcripts reported by VEP
vep rna-seq snp written 2 days ago by newbio17 • 0
1
vote
1
answer
89
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1
answer
How to avoid duplicate edges between same node pair in a co-expression network
duplicate edges cytoscape rna-seq coexpression written 3 days ago by aishu.jp • 10 • updated 3 days ago by Kevin Blighe ♦ 24k
0
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92
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0
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determination of alternate splicing events from assembled transcripts
rna-seq written 3 days ago by blooming.daisy333 • 10
1
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0
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97
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0
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h5 file of cell ranger
rna-seq written 3 days ago by rob.costa1234 • 150
1
vote
1
answer
77
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1
answer
R Model Matrix has extra columns
R limma rna-seq written 3 days ago by tpham2654 • 0
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