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Homolog-level DGE analyses - what to consider?
deseq2 rna-seq differential gene expression written 8 hours ago by ponganta • 50
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38
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1
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What does CHR_HG126_PATCH stand for?
chip-seq rna-seq written 13 hours ago by enora.giffard • 0 • updated 10 hours ago by Kevin Blighe ♦ 69k
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should each RNA-seq has Circular RNA?
ciri2 alignment circular rna rna-seq written 10 hours ago by modarzi • 140
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55
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GSEA from broad institute normalization method
rna-seq written 22 hours ago by Rob • 20 • updated 22 hours ago by Kevin Blighe ♦ 69k
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796
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RNA Seq V2 RSEM Data
rna-seq written 18 months ago by archana.katta9000 • 0 • updated 1 day ago by Biostar ♦♦ 20
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101
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Segmentation fault (core dumped) error with bigWigAverageOverBed
bigwigaverageoverbed rna-seq written 1 day ago by camelest • 10
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83
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1
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Design Matrix with EdgeR or DESeq2
deseq2 edger rna-seq written 1 day ago by reui879 • 10 • updated 1 day ago by i.sudbery ♦ 10k
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189
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RNA-Seq, HTSeq-Counts, counts are ~1M less compared to the reference research paper
htseq-count sequence rna-seq written 1 day ago by xytwwwww • 0
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43
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Error, cannot determine column index for replicate name
de_analysis rna-seq written 1 day ago by Giovy • 0 • updated 1 day ago by Kevin Blighe ♦ 69k
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45
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Stringtie transcripts to Gene Name
R rna-seq assembly written 1 day ago by shrivadeepak • 0
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39
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comment for trimm data
next-gen rna-seq sequencing written 1 day ago by askari.arezou94 • 30 • updated 1 day ago by sarireenjuriya1 • 0
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Missing value imputation for bulk RNA-seq data - which tool to use?
missing data imputation missing values rna-seq nas written 1 day ago by joker33 • 20
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8 follow
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RNA-Seq or Exome Seq for Clinical data analysis
exome next-gen rna-seq sequencing written 3.4 years ago by Karma • 300
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How to extract genes from goana
R rna-seq written 2 days ago by sgallaher03 • 0 • updated 1 day ago by Gordon Smyth • 2.1k
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Error in stop_if_wrong_length(what, ans_len)
R rna-seq written 2 days ago by amirnavidinia2014 • 0 • updated 2 days ago by Pierre Lindenbaum ♦ 133k
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193
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1
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Getting all the genomic coordinates where RNA-seq reads are split within a given genomic interval in a bam file
reads cigar splicing bam rna-seq written 2 days ago by rubic • 200 • updated 2 days ago by Pierre Lindenbaum ♦ 133k
2
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1
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60
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1
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Question about featureCounts strand options
featurecounts rna-seq written 2 days ago by lorenzo • 20
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66
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removal batch effect
rna-seq written 2 days ago by l.nazari • 10 • updated 2 days ago by swbarnes2 ♦ 9.3k
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45
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1
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The two mates do not align to a same transcript -- RSEM error
star rsem rna-seq written 2 days ago by abhilashkannan2987 • 0
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1
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55
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1
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STAR --quantMode GeneCounts vs HTSeq-count
htseq next-gen star rna-seq sequencing written 2 days ago by Uday Rangaswamy • 150 • updated 2 days ago by h.mon ♦ 32k
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33
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Relative frequency. Where's the error?
gene genome sequencing rna-seq assembly written 2 days ago by projetoic • 0
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7 follow
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What is P value and Padj value in DEGs ?
rna-seq written 12 months ago by prakashbasnet2007 • 0 • updated 2 days ago by ruhuiwen0608 • 0
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42
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How to combine my fq file based on sample
rna-seq written 2 days ago by chiachoong_leong93 • 0 • updated 2 days ago by MatthewP • 840
2
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60
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How to determine SC-RNA-SEQ QC filter thresholds in Seurat?
R rna-seq seurat written 2 days ago by dlmatera • 10 • updated 2 days ago by zx8754 ♦ 9.9k
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122
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6 follow
1
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How to handle duplicate row names in R
software error R alignment rna-seq written 2 days ago by koushikayaluri • 40 • updated 2 days ago by zx8754 ♦ 9.9k
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46
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allele specific expression at gene level
ase rna-seq written 2 days ago by qliang2016 • 0 • updated 2 days ago by newbio17 • 320
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168
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cellranger count error "Your reference does not contain the expected files, or they are not readable. Please check your reference folder on n145"
rna-seq written 2 days ago by leranwangcs • 0
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Job: Post-doctoral Research Fellow @ Vanderbilt University Medical Center, Nashville TN USA
R chip-seq job rna-seq written 3 days ago by robb.flynn.az • 0 • updated 3 days ago by _r_am ♦ 32k
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43
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1
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per base sequence content
assembly next-gen rna-seq written 3 days ago by askari.arezou94 • 30 • updated 3 days ago by GenoMax ♦ 94k
3
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6 follow
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Can you tell whether the cell was dead or not using RNA-seq data?
rna-seq written 3 days ago by dcheng1 • 0 • updated 3 days ago by Mensur Dlakic • 8.1k
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