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<prev • 14,478 results • page 1 of 483 • next >
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Why doesn't TCGA .rsem.isoforms.results have a length column?
R tcga rna-seq rsem alternative splicing written 1 day ago by majd.abdulghani • 10
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If I have a ran-seq data of disease A and also rna-seq for disease B on the same platform and If i extracted DEGs from both diseases and find common DEGs; is this analysis ok?
degs rna-seq written 5 hours ago by Md. Al - Mustanjid • 30
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How to normalise RNA-Seq counts for eQTL analysis with MT-eQTL
matrixeqtl eqtl rna-seq written 22 days ago by Colari19 • 50 • updated 7 hours ago by geek_y ♦ 11k
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Read count per exon per transcript
dexseq read count rna-seq bam file written 5.4 years ago by wan.fahmi • 0 • updated 11 hours ago by Biostar ♦♦ 20
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intersect between introns and the UTR/CDS bed files
genome gtf bed rna-seq gene written 12 hours ago by qicaibiology • 70
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Using magicblast for short sequences
genome alignment magicblast rna-seq blast written 12 hours ago by goonerrn • 0 • updated 12 hours ago by genomax ♦ 85k
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comparing enriched GO terms between species
annotation rna-seq go written 16 hours ago by martinaweil • 0
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35
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Bedtools intersect gives empty files
genome gene rna-seq sequencing written 18 hours ago by qicaibiology • 70
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Python code: too slow to compare two dicts
python rna-seq written 21 hours ago by Caroline • 0
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Are Illumina HiSeq 20500 and Illumina NovaSeq 6000 comparable?
rna-seq sequencing written 20 hours ago by Mee • 0
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lift over gene ids rat to human
R biomart rna-seq written 4 days ago by sim.j.baum • 50 • updated 22 hours ago by Mike Smith • 1.5k
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PAM50 analysis from RNAseq data
pam50 tool rna-seq written 1 day ago by mmeghana • 0 • updated 23 hours ago by Kevin Blighe ♦ 61k
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Deconvolution RNA-seq based on Single-RNA-seq?
genome single-cell rna-seq written 1 day ago by star • 240
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DESeq2 design formula with paired samples
deseq2 rna-seq written 1 day ago by helen • 0
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STAR using splice junctions from SJ.out to find flanking exons (GRCh37)
gtf sj.out grch37 star rna-seq written 2.5 years ago by stefanos.bamopoulos • 40 • updated 1 day ago by MirkoR • 0
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Differential expression analysis in DESeq2 for an experiment with multiple variable
deseq2 rna-seq written 1 day ago by Mozart • 190 • updated 1 day ago by ATpoint ♦ 36k
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Batch correction using DESeq2
batch deseq2 rna-seq vst written 2 days ago by Rahil • 150
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Seurat3 DimPlot inconsistency
seurat3 rna-seq seurat written 1 day ago by mbk0asis • 550
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Coloring cluster by cell type and parient id
R rna-seq umap written 1 day ago by no • 0
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Samtools flagstat with sncRNA (single-end reads)
sequence alignment rna-seq written 1 day ago by morteza.aslanzadeh • 10
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RNA-Seq database across rodents
gene expression rna-seq written 1 day ago by qwzhang0601 • 70
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low BUSCO score
assembly rna-seq written 9 months ago by mursyidahkhan • 0 • updated 1 day ago by moharrek_fm66 • 0
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Interaction Factors Removing All Variability
R deseq2 deseq rna-seq written 8 weeks ago by tyak9569 • 0 • updated 1 day ago by antonioggsousa • 240
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In search of Mouse limb cell type markers database
genome gene next-gen rna-seq written 1 day ago by david.f.stein • 10
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Using gene expression data (log2 fold change) to analyze enrichment test with GSEA
log2foldchange rna-seq gsea written 1 day ago by sslimb95 • 0
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How many of the reads end up being counted by HTSeq count
assembly sequence rna-seq written 2 days ago by morteza.aslanzadeh • 10 • updated 2 days ago by Ido Tamir ♦ 5.1k
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SNV and indel calling with RNA-seq data without a reference genome
genome rna-seq snp written 3 days ago by sam891 • 0 • updated 2 days ago by eyonesi • 10
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Calculating Fpkm/Rpkm For Each Read Group Given A Gtf File
gtf rpkm fpkm rna-seq written 6.3 years ago by Nathan S. Watson-Haigh • 190 • updated 2 days ago by Biostar ♦♦ 20
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How to get fastq files for individual replicates?
next-gen de rna-seq written 2 days ago by am010 • 0
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How to process raw data (.cel files) from GEO and get annotation of genes
R rna-seq python written 2 days ago by ZENO3175 • 0 • updated 2 days ago by thind.amarinder • 20
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