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MultiQC real threshold in every parameter
quality control multiqc rna-seq fastqc written 1 hour ago by jimmy0958073736 • 0 • updated 4 minutes ago by GenoMax ♦ 96k
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Seurat obj conversion to Anndata not accurately creating var in a h5ad file
anndata R rna-seq seurat written 41 minutes ago by akh22 • 50
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I need to create a box plot for RPKM normalised data, can anyone please help me to make me understand, how to create a box plot for this given data
R rna-seq written 2 hours ago by rishav513 • 0
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How to save DEXSeq result to a .csv file ?
R rna-seq written 5 hours ago by Aynur • 40
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Job: Job Posting - Computational Biologist at UTSW
next-gen chip-seq job rna-seq written 6 hours ago by Laura.banaszynski • 0
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How to get coverage for specific base(s), and for specific mismatch(es) per genomic range
rna-seq written 7 hours ago by lech.kaczmarczyk • 0
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46
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Identifying novel mRNA transcripts
rna-seq written 16 hours ago by Pranathi_Limmala • 0 • updated 8 hours ago by Kevin Blighe ♦ 71k
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65
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Cell type specificity analysis (microglia+oligodendrocytes)
gene rna-seq written 17 days ago by egenetics • 0 • updated 8 hours ago by Biostar ♦♦ 20
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Inter-species RNAseq normalisation
deseq2 salmon edger rna-seq expression written 9 hours ago by pprice3 • 0
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Focusing on a handful of genes during RNA seq
gene assembly rna-seq written 10 hours ago by snow4964 • 0
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Advantages of different methods to transfer GO annotations
annotation rna-seq go written 10 hours ago by Rogerio Ribeiro • 30
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gene info was partially lost while making txdb object from GFF file
rna-seq written 10 hours ago by citronxu • 10
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3
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Mapping with data stored on external hard disk
alignment rna-seq written 13 hours ago by kuilin • 0 • updated 11 hours ago by GenoMax ♦ 96k
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39
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microRNAs with RNEasy Mini Kit (Qiagen)
rna-seq written 13 hours ago by diego1530 • 30
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138
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How to compare all groups of RNA-Seq samples with each other in one go?
R rna-seq edger written 8 weeks ago by bio100 • 0 • updated 14 hours ago by Biostar ♦♦ 20
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38
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best way to analyze a subset of DE genes
gene expression deseq rna-seq written 14 hours ago by Lila M • 890
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44
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1
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Annotating reads with the name of the feature to which they map
rna-seq written 1 day ago by lech.kaczmarczyk • 0 • updated 17 hours ago by A. Domingues • 2.4k
3
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62
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1
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DESeq2 MA plot label subset of genes
R deseq rna-seq written 23 hours ago by kstangline • 20 • updated 18 hours ago by zx8754 ♦ 9.9k
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Error in reading MatrixMarket file format using Seurat Read10X
10x rna-seq seurat written 5 days ago by Nico • 0 • updated 20 hours ago by Gordon Smyth • 2.3k
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Analyzing RNA-Seq with duplicate ensembl ids using DESeq2: should tximport be used?
R alignment rna-seq written 23 hours ago by Ridha • 0
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74
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Identifying cancer subtypes
gene rna-seq written 6 days ago by glady • 270 • updated 1 day ago by Biostar ♦♦ 20
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Mapping long RNAseq reads to genome with nextGenMap - how to adjust parameters?
rna-seq written 1 day ago by lech.kaczmarczyk • 0
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1
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58
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1
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De novo transcriptome assembly
rna-seq written 1 day ago by pallob.barai • 0 • updated 1 day ago by Mensur Dlakic • 9.0k
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43
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Nesting a covariate for differential expression design
covariates rna-seq nested written 1 day ago by RNAseqer • 150
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1
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50
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1
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Batch-correction of partially confounded RNA-seq data
rna-seq written 1 day ago by James Ashmore • 3.1k • updated 1 day ago by Carlo Yague ♦ 5.7k
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6 follow
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solving heap size problem in linux
rna-seq written 23 months ago by Liftedkris • 20 • updated 1 day ago by Biostar ♦♦ 20
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137
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How to subset SummarizedExperiment object with multiple experiments?
R rna-seq written 6 weeks ago by Omar Mohamed • 0 • updated 1 day ago by Biostar ♦♦ 20
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72
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Finding out genes belonging to modules
wgcna next-gen rna-seq R written 1 day ago by reara • 20
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1
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774
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1
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HISAT2 Error Building Index
rna-seq hisat2 written 15 months ago by adam.faranda • 80 • updated 2 days ago by Biostar ♦♦ 20
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LEfSe for multiple samples
metagenomics environmental genomics rna-seq written 2 days ago by willnotburn • 40 • updated 2 days ago by h.mon ♦ 32k
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