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Finding DEGenes taking into account the DEG of a compared control condition

R sgrna limma rna-seq edger written 3 months ago by mcalleja • 90

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461

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Job: Senior Postdoc Bioinformatician @VIB-UGent

phenotype data 5-year job sgrna visualisation maize written 9 months ago by lieven.sterck ♦ 6.9k

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364

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What is the best way to costract a Crispr library

crispr sgrna library written 13 months ago by Assa Yeroslaviz • 1.3k

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Trouble shooting with cutadapt -bash: cutadapt: command not found

seq sgrna cutadapt written 3.7 years ago by Pigasos83 • 0

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1.0k

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Does sgRNA have to be complementary to DNA strand?

python sgrna written 3.8 years ago by darkmatter1996 • 0

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Recent Replies

C: Blastn command line tab format gives duplicates by Fatima • 350
Oh, okay! It had worked for me in the past. I used a dataset of genes and a comprehensive set of ...
C: Append TPM value to sequence header in FASTA file by JC ♦ 9.5k
Yes, examples could be better to understand how complex/easy it is.
C: Downstream RNA seq analysis by RamRS ♦ 25k
I think one way to go would be to do a gene set enrichment analysis to look for pathways (or GO t...
C: Differential gene expression, starting from RSEM expected count values. by ATpoint ♦ 29k
`tximport` was developed by Mike Love, the developer and maintainer of `DESeq2`, not by the `edg...
C: Append TPM value to sequence header in FASTA file by ATpoint ♦ 29k
Please add example data for input and desired output.
C: None of the variants updated from hg18 to 19 by NS • 0
How about I perform imputation for these chromosomes using hg18 reference panel and then lift the...
C: None of the variants updated from hg18 to 19 by ATpoint ♦ 29k
If you cannot lift them it means that the regions you aligned to are not reliable so they did not...
A: NCBI website BLAST and local computer blast by t4192 • 10
[I found a youtube video][1], please watch the content after 3:00. Do you understand what the vid...
A: RNASeq user experience with Novogene? by jiahaohaox • 0
We had a very bad experience with Novogene which made us realized that they are purposed to make ...
C: LexWords perl module for ProDeGe software by kmyers2 • 30
Thank you very much! That's it!
C: LexWords perl module for ProDeGe software by Arup Ghosh ♦ 2.1k
I think the module you are looking for is available in this repo: https://bitbucket.org/berkeleyl...
C: Are there any issues with using sample reads coming from different technologies by serpalma.v • 30
yes, we just got the new data

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