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Finding DEGenes taking into account the DEG of a compared control condition

R sgrna limma rna-seq edger written 11 days ago by mcalleja • 80

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363

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Job: Senior Postdoc Bioinformatician @VIB-UGent

phenotype data 5-year job sgrna visualisation maize written 6 months ago by lieven.sterck ♦ 6.3k

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298

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What is the best way to costract a Crispr library

crispr sgrna library written 10 months ago by Assa Yeroslaviz • 1.2k

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3.4k

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Trouble shooting with cutadapt -bash: cutadapt: command not found

seq sgrna cutadapt written 3.5 years ago by Pigasos83 • 0

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953

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Does sgRNA have to be complementary to DNA strand?

python sgrna written 3.5 years ago by darkmatter1996 • 0

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Scholar to h.mon ♦ 28k
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Recent Replies

C: Running IsoSeq pipeline by entropy • 30
I have the exact same question but "primers.fasta" is input file is not found in isoseq pipeline...
A: Thousands of significant differentially expressed genes but no significant enric by colin.kern • 710
> 1.) Is it possible to have no significant pathways despite having such a large fraction of t...
C: Vcftools r2 Error: Insufficient sites remained after filtering or No data left by danielpovedam • 0
its means that the output of that command show the r2 for each SNPs ? and with this information I...
C: Want read count with respect to geneID instead of transcript IDs by colin.kern • 710
This might answer your question: https://www.biostars.org/p/119540/
C: Cellranger count fails at mapping by swbarnes2 ♦ 7.0k
I'm pretty sure all the 3+ versions do not need the indices as a separate file. I just did a cel...
C: Retrieve multiple FASTA from UniProt using R by h.mon ♦ 28k
BioConductor is a repository, not a package. The Rcpi link above has clear install instructions: ...
C: readTranscriptFeatures from genomation by lieven.sterck ♦ 6.3k
A small educational note: I added (code) markup to your post for increased readability. You can d...
C: Cellranger count fails at mapping by genomax ♦ 74k
OP appears to be using v.3.0.1 which is not the latest (v.3.1.0).
C: Can some one help me find the locus tags of this strain of DNA by genomax ♦ 74k
Are you only interested in the piece of sequence you posted in the original question? Solution I ...
C: IGV Fasta Error: Uneven Line Lengths by swbarnes2 ♦ 7.0k
There is no restriction length however, all the sequences have to be the **same** length.
C: Retrieve multiple FASTA from UniProt using R by akansha.gitanjali • 0
Yes I can download whole proteome from Example Retrieval Uniprot. But I want to use different uni...
C: Cellranger count fails at mapping by swbarnes2 ♦ 7.0k
Newer versions of cellranger don't need that.

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