Showing: stringtiereset
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What's the difference of FPKM generated by htseq and stringtie?
htseq fpkm stringtie written 17 days ago by hxlei61380 • updated 17 days ago by Devon Ryan86k
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117
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Hisat2 output for stringtie
stringtie hisat2 written 26 days ago by Sam80 • updated 25 days ago by Vijay Lakhujani3.4k
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125
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Error in running DESeqDataSetFromTximport
tximport R stringtie deseq2 rna-seq written 29 days ago by ankur0 • updated 29 days ago by Devon Ryan86k
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Unable to create file for tximport
tximport stringtie deseq2 rna-seq written 4 weeks ago by ankur0 • updated 4 weeks ago by kristoffer.vittingseerup1.0k
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6 follow
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Where to find a valid GTF file for stringtie asssembly?
gtf stringtie transcriptome written 8 weeks ago by Vijay Lakhujani3.4k • updated 8 weeks ago by Damian Kao15k
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Gffread error: Error (GFaSeqGet): subsequence cannot be larger than...
stringtie gffread rna-seq written 17 months ago by jjrin10 • updated 10 weeks ago by spriyar10
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Too Many StringTie Genes
stringtie written 12 weeks ago by gtasource20
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Estimating the abundance of the transcripts and genes using stringtie
stringtie rna-seq written 11 months ago by amy1630 • updated 12 weeks ago by iraia.munoa10
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174
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How to deal with single transcripts assigned to multiple genes?
stringtie rna-seq hisat2 written 3 months ago by antoinefelden20 • updated 12 weeks ago by RamRS19k
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Proper design for DESeq2 and other RNAseq general questions
stringtie deseq2 rna-seq hisat2 written 3 months ago by Stef0 • updated 3 months ago by swbarnes24.6k
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FPKM matrix after stringtie using ballgown
stringtie ballgown fpkm rna-seq written 3 months ago by Bioinfo270 • updated 3 months ago by Adrian Pelin2.2k
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how to find novel genes and transcripts in gffcompare?
stringtie rna-seq gffcompare written 11 months ago by naveenkumarv4020 • updated 5 months ago by geek_y8.8k
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Adding tag XS to HISAT2 sam files perior to StringTie
stringtie alignment samtools rna-seq hisat2 written 5 months ago by Farbod3.2k • updated 5 months ago by Vijay Lakhujani3.4k
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Unknown Stringtie IDs produced when using Ensembl GTF
gtf ensembl stringtie rna-seq written 6 months ago by freuv20 • updated 6 months ago by Emily_Ensembl16k
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Stringtie output files
gtf stringtie rna-seq written 6 months ago by g.e.novakovsky20 • updated 6 months ago by Kevin Blighe33k
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7 follow
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How many genes in RNA seq?
stringtie rna-seq written 6 months ago by ag1805x120
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Stringtie prepDE.py Error line 32
stringtie deseq2 ballgown rna-seq prepde.py written 8 months ago by bryce.kirby0 • updated 6 months ago by Biostar ♦♦ 20
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stringtie merged gtf doesn't give any gene expression columns
stringtie merge rna-seq hisat2 written 7 months ago by Biologist110 • updated 7 months ago by Kevin Blighe33k
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