Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 154 results • page 1 of 6 • next >
0
votes
1
answer
74
views
1
answer
Does transcriptome assembly data contains introns?
assembly stringtie transcriptome rna-seq hisat2 written 10 days ago by noorussubah95 • 0 • updated 10 days ago by lieven.sterck ♦ 10k
0
votes
0
answers
62
views
0
answers
Is there a way to identify which MSTRGs (novel StringTie transcripts) are potential novel ncRNAs?
rnaseq stringtie novel transcripts ncrna mstrg written 10 days ago by Jen • 0
0
votes
0
answers
78
views
0
answers
Finding assembled transcript sequences from StringTie output
stringtie assembled transcripts sequences rna-seq written 12 days ago by Jen • 0
0
votes
1
answer
75
views
1
answer
lncRNA identification from RNAseq data
stringtie lncrna rna rna-seq hisat2 written 14 days ago by pipe_cvm2 • 0 • updated 14 days ago by EagleEye ♦ 6.8k
9
votes
4
answers
5.1k
views
11 follow
4
answers
How to extract fasta sequences from assembled transcripts generated by Stringtie
fasta gtf file stringtie sequences written 3.8 years ago by seta • 1.4k • updated 5 weeks ago by DNAvinci • 0
1
vote
2
answers
318
views
2
answers
STAR and StringTie to identify novel isoforms (please check my work)
stringtie gffcompare star novel isoforms rna-seq written 9 weeks ago by Jen • 0 • updated 9 weeks ago by rishikeshgour741 • 0
2
votes
1
answer
207
views
5 follow
1
answer
Too many novel isoforms (57% of total) identified using StringTie
stringtie novel isoforms written 10 weeks ago by Jen • 20
0
votes
0
answers
136
views
0
answers
Error when running Stringtie Merge: Error getting header ID# for gseq 1
assembly stringtie written 3 months ago by nattzy94 • 20
1
vote
1
answer
237
views
1
answer
Stringtie 2.1.4: Error running prepDE.py
stringtie written 4 months ago by venura • 60
1
vote
0
answers
1.6k
views
0
answers
hisat2-stringtie-ballgown pipeline gives high p-value and q-value for RNA-seq of Arabidopsis thaliana
ballgown arabidopsis stringtie rna-seq hisat2 written 24 months ago by tiancaigg • 10 • updated 4 months ago by 20482485 • 0
0
votes
0
answers
261
views
0
answers
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
ballgown hisat2 stringtie isoform rna-seq written 5 months ago by ra711 • 0 • updated 5 months ago by GenoMax ♦ 96k
3
votes
1
answer
865
views
7 follow
1
answer
Can I ignore these MSTRG genes in downstream analysis (pantherdb.org)?
stringtie deseq2 rna-seq written 23 months ago by Fawzi Yassine • 20 • updated 5 months ago by kristoffer.vittingseerup • 3.5k
0
votes
1
answer
266
views
1
answer
Resolving expression profiles of genes with same name but different MSTRG ID
stringtie rna-seq differential gene expression written 7 months ago by SJ Basu • 30 • updated 5 months ago by kristoffer.vittingseerup • 3.5k
5
votes
2
answers
638
views
2
answers
Stringie output doesn't have any gene names!
stringtie rna-seq written 17 months ago by c_u • 290 • updated 5 months ago by kristoffer.vittingseerup • 3.5k
2
votes
1
answer
502
views
1
answer
StringTie --merge creates the same id for neighbouring genes
ensembl stringtie gene assembly written 19 months ago by marina.v.yurieva • 550 • updated 5 months ago by kristoffer.vittingseerup • 3.5k
0
votes
0
answers
462
views
0
answers
Annotation for gene-level analysis after stringtie
annotation stringtie tuxedo rna-seq written 6 months ago by atorson • 0 • updated 5 months ago by Biostar ♦♦ 20
3
votes
1
answer
340
views
1
answer
Ambiguous results of RNA-Seq data using stringtie with edgeR
stringtie rna-seq edger written 7 months ago by ilovesuperheroes1993 • 10 • updated 5 months ago by swbarnes2 ♦ 9.6k
0
votes
0
answers
222
views
0
answers
Hybrid transcriptome assembly
illumina stringtie nanopore rna-seq written 5 months ago by Rogerio Ribeiro • 30
0
votes
0
answers
398
views
0
answers
Missing assembled transcripts after Stringtie merge
assembly stringtie rna-seq written 8 months ago by Ziliang Luo • 0
0
votes
0
answers
296
views
0
answers
Using StringTie --merge across multiple RNAseq datasets
rnaseq stringtie written 6 months ago by nmbaran • 0 • updated 6 months ago by Biostar ♦♦ 20
1
vote
0
answers
230
views
0
answers
Denovo assembly or Reference based assembly for identifying novel lncRNAs
stringtie hisat2 denovoassembly rna-seq lncrna written 6 months ago by newbie • 90
0
votes
0
answers
149
views
0
answers
Using StringTie with CAGE-seq data
stringtie written 6 months ago by nickhir • 30
4
votes
2
answers
393
views
8 follow
2
answers
Create table of gene expression for multiple samples
hisat stringtie rna-seq written 7 months ago by microbiotaiota • 20 • updated 7 months ago by Kevin Blighe ♦ 71k
2
votes
1
answer
5.3k
views
1
answer
How to run HISAT2 / Stringtie / Ballgown analysis starting with gff file
gtf gff stringtie hisat2 written 4.2 years ago by al-ash • 150 • updated 8 months ago by Biostar ♦♦ 20
2
votes
3
answers
1.1k
views
6 follow
3
answers
'gene_name' is missing in StringTie output file 't_data.ctab'
stringtie deseq2 new tuxedo protocol rna-seq written 2.3 years ago by swarajgaikwad15 • 30 • updated 8 months ago by lonchnan • 0
10
votes
2
answers
555
views
2
answers
Is Stringtie a suitable tool for both gene and transcript quantification?
gene stringtie featurecounts rna-seq sequencing written 9 months ago by tianshenbio • 80 • updated 9 months ago by i.sudbery ♦ 11k
1
vote
0
answers
588
views
0
answers
Read counts at gene and transcript level - hisat2+Featurecounts or Stringtie?+deseq2
stringtie featurecounts deseq2 rna-seq hisat2 written 9 months ago by tianshenbio • 80
1
vote
0
answers
241
views
0
answers
RNA-seq transcript assembly, novel transcript identification and visualisation
assembly stringtie visualization transcript written 9 months ago by andreismolnikov00 • 10
0
votes
1
answer
300
views
1
answer
stringtie coverage -c parameter?
stringtie coverage transcript assembly written 9 months ago by MACRODER • 0 • updated 9 months ago by nlehmann • 110
0
votes
0
answers
254
views
0
answers
Request to support for issue facing in Ballgown
R stringtie next-gen rna-seq written 10 months ago by dikshapandey28 • 0 • updated 10 months ago by cpad0112 ♦ 15k
<prev • 154 results • page 1 of 6 • next >
Recent Votes
Recent Locations • All »
  • Brazil, 1 minute ago
  • United States, 2 minutes ago
  • Danmarks Tekniske Universitet, 2 minutes ago
  • Washington DC, 3 minutes ago
  • London, 5 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2348 users visited in the last hour
_