Showing: stringtiereset
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StringTie - Multimapped reads
assembly stringtie rna-seq multi-mapped reads written 5 weeks ago by sneha108.ss0 • updated 5 weeks ago by kristoffer.vittingseerup1.4k
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Add double qoutes around transcript_id in gtf file
gtf stringtie rna-seq awk written 7 weeks ago by BioBaby0 • updated 7 weeks ago by finswimmer9.8k
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What's the difference of FPKM generated by htseq and stringtie?
htseq fpkm stringtie written 11 weeks ago by hxlei61380 • updated 11 weeks ago by Devon Ryan88k
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Hisat2 output for stringtie
stringtie hisat2 written 12 weeks ago by Sam100 • updated 12 weeks ago by biokoala3.6k
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Error in running DESeqDataSetFromTximport
tximport R stringtie deseq2 rna-seq written 12 weeks ago by ankur0 • updated 12 weeks ago by Devon Ryan88k
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Unable to create file for tximport
tximport stringtie deseq2 rna-seq written 12 weeks ago by ankur0 • updated 12 weeks ago by kristoffer.vittingseerup1.4k
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Where to find a valid GTF file for stringtie asssembly?
gtf stringtie transcriptome written 4 months ago by biokoala3.6k • updated 4 months ago by Damian Kao15k
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Gffread error: Error (GFaSeqGet): subsequence cannot be larger than...
stringtie gffread rna-seq written 19 months ago by jjrin10 • updated 4 months ago by spriyar10
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Too Many StringTie Genes
stringtie written 4 months ago by gtasource20
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Estimating the abundance of the transcripts and genes using stringtie
stringtie rna-seq written 13 months ago by amy1630 • updated 4 months ago by iraia.munoa50
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How to deal with single transcripts assigned to multiple genes?
stringtie rna-seq hisat2 written 4 months ago by antoinefelden20 • updated 4 months ago by RamRS20k
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Proper design for DESeq2 and other RNAseq general questions
stringtie deseq2 rna-seq hisat2 written 4 months ago by Stef0 • updated 4 months ago by swbarnes24.8k
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FPKM matrix after stringtie using ballgown
stringtie ballgown fpkm rna-seq written 5 months ago by Vasu300 • updated 5 months ago by Adrian Pelin2.2k
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how to find novel genes and transcripts in gffcompare?
stringtie rna-seq gffcompare written 13 months ago by naveenkumarv4020 • updated 7 months ago by geek_y9.1k
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Adding tag XS to HISAT2 sam files perior to StringTie
stringtie alignment samtools rna-seq hisat2 written 7 months ago by Farbod3.2k • updated 7 months ago by biokoala3.6k
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