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<prev • 148 results • page 1 of 5 • next >
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Error when running Stringtie Merge: Error getting header ID# for gseq 1
assembly stringtie written 7 hours ago by nattzy94 • 20
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121
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1
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Stringtie 2.1.4: Error running prepDE.py
stringtie written 4 weeks ago by venura • 60
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hisat2-stringtie-ballgown pipeline gives high p-value and q-value for RNA-seq of Arabidopsis thaliana
ballgown arabidopsis stringtie rna-seq hisat2 written 20 months ago by tiancaigg • 10 • updated 5 weeks ago by 20482485 • 0
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129
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HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
ballgown hisat2 stringtie isoform rna-seq written 7 weeks ago by ra711 • 0 • updated 7 weeks ago by genomax ♦ 92k
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Can I ignore these MSTRG genes in downstream analysis (pantherdb.org)?
stringtie deseq2 rna-seq written 20 months ago by Fawzi Yassine • 10 • updated 9 weeks ago by kristoffer.vittingseerup • 3.4k
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Resolving expression profiles of genes with same name but different MSTRG ID
stringtie rna-seq differential gene expression written 4 months ago by SJ Basu • 30 • updated 9 weeks ago by kristoffer.vittingseerup • 3.4k
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552
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2
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Stringie output doesn't have any gene names!
stringtie rna-seq written 14 months ago by c_u • 280 • updated 9 weeks ago by kristoffer.vittingseerup • 3.4k
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1
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386
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1
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StringTie --merge creates the same id for neighbouring genes
ensembl stringtie gene assembly written 16 months ago by marina.v.yurieva • 520 • updated 9 weeks ago by kristoffer.vittingseerup • 3.4k
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297
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Annotation for gene-level analysis after stringtie
annotation stringtie tuxedo rna-seq written 3 months ago by atorson • 0 • updated 10 weeks ago by Biostar ♦♦ 20
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1
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Ambiguous results of RNA-Seq data using stringtie with edgeR
stringtie rna-seq edger written 4 months ago by ilovesuperheroes1993 • 0 • updated 10 weeks ago by swbarnes2 ♦ 9.2k
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138
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Hybrid transcriptome assembly
illumina stringtie nanopore rna-seq written 11 weeks ago by Rogerio Ribeiro • 30
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285
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Missing assembled transcripts after Stringtie merge
assembly stringtie rna-seq written 4 months ago by Ziliang Luo • 0
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199
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Using StringTie --merge across multiple RNAseq datasets
rnaseq stringtie written 3 months ago by nmbaran • 0 • updated 12 weeks ago by Biostar ♦♦ 20
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Denovo assembly or Reference based assembly for identifying novel lncRNAs
stringtie hisat2 denovoassembly rna-seq lncrna written 3 months ago by newbie • 90
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104
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Using StringTie with CAGE-seq data
stringtie written 3 months ago by nickhir • 20
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2
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8 follow
2
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Create table of gene expression for multiple samples
hisat stringtie rna-seq written 3 months ago by microbiotaiota • 20 • updated 3 months ago by Kevin Blighe ♦ 67k
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How to run HISAT2 / Stringtie / Ballgown analysis starting with gff file
gtf gff stringtie hisat2 written 4.0 years ago by al-ash • 140 • updated 5 months ago by Biostar ♦♦ 20
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3
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6 follow
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'gene_name' is missing in StringTie output file 't_data.ctab'
stringtie deseq2 new tuxedo protocol rna-seq written 2.0 years ago by swarajgaikwad15 • 20 • updated 5 months ago by lonchnan • 0
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Is Stringtie a suitable tool for both gene and transcript quantification?
gene stringtie featurecounts rna-seq sequencing written 5 months ago by tianshenbio • 70 • updated 5 months ago by i.sudbery ♦ 9.7k
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361
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Read counts at gene and transcript level - hisat2+Featurecounts or Stringtie?+deseq2
stringtie featurecounts deseq2 rna-seq hisat2 written 6 months ago by tianshenbio • 70
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161
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RNA-seq transcript assembly, novel transcript identification and visualisation
assembly stringtie visualization transcript written 6 months ago by andreismolnikov00 • 0
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1
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203
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1
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stringtie coverage -c parameter?
stringtie coverage transcript assembly written 6 months ago by MACRODER • 0 • updated 6 months ago by nlehmann • 100
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189
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Request to support for issue facing in Ballgown
R stringtie next-gen rna-seq written 7 months ago by dikshapandey28 • 0 • updated 7 months ago by cpad0112 ♦ 14k
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172
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Stringtie Merge file difference MSTRG Question
stringtie merge rna-seq written 7 months ago by aaghodsinia • 0
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384
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1
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Should i use Stringtie gene count or transcript count as input for DESEQ2? What is difference between gene count and transcript count?
gene stringtie deseq2 rna-seq transcript written 7 months ago by aaghodsinia • 0 • updated 7 months ago by ATpoint ♦ 41k
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1
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254
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1
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Stringtie duplicate transcripts
assembly stringtie rna-seq written 7 months ago by nirkoty • 0 • updated 7 months ago by kristoffer.vittingseerup • 3.4k
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1
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Snakemake - Missing MissingInputException in line 20: Missing input files for rule stringt:
snakefile stringtie snakemake rna-seq hisat2 written 7 months ago by shivani.avera • 0 • updated 7 months ago by Asaf ♦ 8.5k
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323
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1
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How to recover 5'UTR, CDS, start codon after GTF merging ?
gtf annotation stringtie gffcompare cuffmerge written 8 months ago by nlehmann • 100
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1
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469
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1
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Stringtie2: how to interpret conflicts between results
de novo annotation stringtie long-reads rna-seq written 9 months ago by nlehmann • 100 • updated 9 months ago by Kevin Blighe ♦ 67k
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210
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Problem in using tablemaker for bam & gtf files
tablemaker stringtie alignment samtools rna-seq written 9 months ago by Doofania • 10 • updated 9 months ago by ATpoint ♦ 41k
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