Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: stringtie • reset
or   Classic search
<prev • 31 results • page 1 of 2 • next >
0
votes
0
answers
84
views
0
answers
Calculating the gene coverage in StringTie
gene stringtie coverage rna-seq written 4 days ago by sjbasu • 0
0
votes
0
answers
90
views
0
answers
Gffread error: Error (GFaSeqGet): subsequence cannot be larger than...
stringtie gffread rna-seq written 17 days ago by jjrin • 10 • updated 11 days ago by Biostar ♦♦ 20
3
votes
1
answer
179
views
5 follow
1
answer
Using StringTie with DESeq2(StringTie geneID and corresponding Ensembl geneID)
stringtie deseq2 written 17 days ago by Megan • 20 • updated 16 days ago by stephensmithgalway • 20
0
votes
0
answers
99
views
0
answers
STAR/StringTie compatibility on tag HI in the BAM alignment file
stringtie star written 17 days ago by Megan • 20
1
vote
0
answers
120
views
0
answers
Help analysing StringTie output on Galaxy
stringtie galaxy rna-seq transcript assembly written 18 days ago by florian.laforets • 0
3
votes
0
answers
138
views
0
answers
Help regarding RNA-seq STRINGTIE pipeline and output
stringtie rna-seq written 4 weeks ago by pixie@bioinfo • 1.1k
0
votes
0
answers
124
views
0
answers
stringtie (.gtf) vs ballgown (t_data.ctab) FPKM values do not match - why?
stringtie ballgown fpkm rna-seq written 4 weeks ago by cpak1981 • 20
0
votes
0
answers
106
views
0
answers
StringTie -e estimate parameter
gene annotation stringtie rna-seq transcripts written 5 weeks ago by k.mooo • 0
0
votes
1
answer
178
views
1
answer
StringTie reports 0 coverage for all reference transcripts
stringtie rna-seq written 9 weeks ago by PoGibas ♦ 4.6k • updated 5 weeks ago by k.mooo • 0
0
votes
0
answers
163
views
0
answers
stringtie GFF Error: overlapping duplicate transcript feature
stringtie error written 9 weeks ago by 1374906590 • 0 • updated 9 weeks ago by genomax ♦ 30k
0
votes
0
answers
164
views
0
answers
How to extract fasta sequences from assembled transcripts generated by Stringtie
fasta gtf file stringtie sequences written 10 weeks ago by seta • 900
2
votes
1
answer
243
views
1
answer
Merging stringtie assemblies using stringtie merge
assembly stringtie merge rna-seq transcriptome written 3 months ago by Vijay Lakhujani • 1.1k
0
votes
0
answers
300
views
0
answers
Warning encountered while transcript abundance estimation using stringtie
stringtie rna-seq abundance written 3 months ago by Vijay Lakhujani • 1.1k
1
vote
1
answer
205
views
1
answer
Error running gffcompare
gff stringtie gffcompare rna-seq written 3 months ago by Vijay Lakhujani • 1.1k • updated 3 months ago by Macspider • 1.2k
0
votes
0
answers
240
views
0
answers
Cuffcompare on the merged GTF file produced by Stringtie
stringtie cufflinks cuffdiff splicing written 3 months ago by seta • 900 • updated 3 months ago by Biostar ♦♦ 20
0
votes
1
answer
184
views
1
answer
Error using StringTie
exit code 139 stringtie written 3 months ago by dabs17 • 0 • updated 3 months ago by Devon Ryan ♦ 68k
0
votes
2
answers
515
views
2
answers
Please adivse me on differential expression analysis on the STAR/Stringtie output
count stringtie star differential expression edger written 5 months ago by seta • 900 • updated 4 months ago by dunhamcg • 0
0
votes
1
answer
493
views
1
answer
An odd error with StringTie!!
rnaseq stringtie error written 5 months ago by seta • 900 • updated 5 months ago by Devon Ryan ♦ 68k
2
votes
0
answers
508
views
0
answers
RNA seq analysis using STAR+StringTie
stringtie star rna-seq written 6 months ago by fatima • 0
7
votes
1
answer
326
views
1
answer
Generate more splice variant from RNA-seq data
stringtie isoforms rna-seq alternative splicing written 6 months ago by nim.1111.ou • 10
1
vote
1
answer
310
views
1
answer
StringTie with Ensembl annotation: Fuzzy exon identification
ensembl stringtie annotation written 7 months ago by jonasmst • 280 • updated 7 months ago by Macspider • 1.2k
1
vote
1
answer
810
views
1
answer
How to run HISAT2 / Stringtie / Ballgown analysis starting with gff file
gtf gff stringtie hisat2 written 7 months ago by al-ash • 0
2
votes
1
answer
1.1k
views
1
answer
Problem in the results of StringTie
stringtie rna-seq written 16 months ago by wangyang703092 • 70 • updated 7 months ago by jonasmst • 280
3
votes
2
answers
1.3k
views
2
answers
Gene count table from STRINGTIE/BALLGOWN for WGCNA
wgcna stringtie ballgown rna-seq written 9 months ago by devikaparvathy • 10 • updated 8 months ago by Albert • 80
2
votes
0
answers
1.7k
views
0
answers
StringTie: To use a reference gene-set or not?
stringtie rna-seq written 11 months ago by i.sudbery • 1.3k • updated 9 months ago by Biostar ♦♦ 20
5
votes
1
answer
560
views
1
answer
Does CDS, start_codon and stop_codon in gtf affect transcriptome assembly by StringTie?
gtf annotation stringtie rna-seq assembly written 14 months ago by syrttgump • 30 • updated 14 months ago by Amitm • 1.3k
0
votes
0
answers
683
views
0
answers
Can't group samples in StringTie for differential expression
stringtie rna-seq differential expression written 15 months ago by CandiceChuDVM • 1.2k
4
votes
2
answers
585
views
2
answers
De novo transcript assembly from multiple RNA-seq datasets
stringtie rna-seq transcript assembly written 15 months ago by joao.curado • 0
5
votes
2
answers
3.2k
views
2
answers
HISAT (Transcript Alignment) and StringTie (Transcript Assembly)
hisat stringtie rna-seq written 2.8 years ago by komal.rathi • 2.9k • updated 17 months ago by george.ry • 980
0
votes
1
answer
549
views
1
answer
need to identify CDS (translation) for gene models predicted by Cufflinks and Stringtie
stringtie cufflinks rna-seq written 18 months ago by Ann • 2.1k • updated 18 months ago by Chirag Nepal • 1.9k
<prev • 31 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • Belgium, 7 minutes ago
  • United Kingdom, 7 minutes ago
  • United Kingdom, 13 minutes ago
  • Israel, 20 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 477 users visited in the last hour