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Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
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What is your question? Add details and clarity. Ask a precise question and please avoid opening more questions on the same underlying issue…
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If you have the accession numbers can you not use something like `eutils`?
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Thank you very much! I tried it out! This is a handy tool useful for many different applications, and in regards to my problem - although …
Comment: Create a new bed file with all pairwise combinations between two other bed files
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Thank you for replying Pierre. I first added a third column to the SNP bed file, so that I would get a range of 1 for each SNP awk 'B…
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> using bcftools Show us what you tried
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These are the first lines of the output: (Please is it normal to have NA in the P value column ?) CHR …
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Thank you, the `csvtk spread` is super useful. I usually import into R using `lapply` then `Reduce` using `merge` but this might be easier.
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