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447
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Which type of variant caller should I use in a WES normal cell line sample?
variant-caller
WES
updated 14 months ago by
ATpoint
84k • written 14 months ago by
bompipi95
▴ 160
0
votes
0
replies
581
views
Picard's CollectGcBiasMetrics gc-bias plot- help with interpretation
picard
gc-bias
wes
14 months ago by
bompipi95
▴ 160
1
vote
3
replies
1.4k
views
Off-target % for whole-exome sequencing panel
WES
updated 14 months ago by
trausch
★ 1.9k • written 14 months ago by
bompipi95
▴ 160
0
votes
1
reply
631
views
WES variant calling with DNBSEQ-T7 - technical quality assessment
WES
DNA-seq
GATK
variant-calling
mutect2
updated 14 months ago by
colindaven
6.5k • written 14 months ago by
bompipi95
▴ 160
0
votes
2
replies
638
views
Integrating single-nucleus RNA-seq and single-cell RNA-seq datasets
snRNAseq
single-cell
scRNAseq
16 months ago by
bompipi95
▴ 160
1
vote
2
replies
1.0k
views
Check my understanding - difference between number of reads sequenced and Seurat nCount_RNA
scRNAseq
16 months ago by
bompipi95
▴ 160
6
votes
3
replies
924
views
To batch correct or analyse separately?
scRNA-seq
batch-effect
updated 17 days ago by
Ram
44k • written 17 months ago by
bompipi95
▴ 160
4
votes
4
replies
984
views
Aligning reads from mouse samples that express 1 human gene
realignment
updated 20 months ago by
swbarnes2
14k • written 20 months ago by
bompipi95
▴ 160
3
votes
1
reply
834
views
t2t human reference genome for RNA-seq
t2t
hs1
RNA-seq
updated 16 months ago by
O.rka
▴ 740 • written 21 months ago by
bompipi95
▴ 160
6
votes
2
replies
982
views
Identifying tumor vs normal cells in scRNAseq samples
seurat
CNV
scRNA-seq
cancer
updated 23 months ago by
benformatics
4.0k • written 23 months ago by
bompipi95
▴ 160
2
votes
2
replies
1.2k
views
Help with kallisto-bustools: how to interpret the inspect.json output file
scRNAseq
bustools
kallisto
updated 13 months ago by
Ram
44k • written 2.2 years ago by
bompipi95
▴ 160
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