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157
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Which type of variant caller should I use in a WES normal cell line sample?
variant-caller WES
updated 6 days ago by 72k • written 6 days ago by ▴ 120
0
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0
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112
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Picard's CollectGcBiasMetrics gc-bias plot- help with interpretation
picard gc-bias wes
12 days ago by bompipi95 ▴ 120
0
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3
replies
351
views
Off-target % for whole-exome sequencing panel
WES
updated 13 days ago by ★ 1.8k • written 13 days ago by ▴ 120
0
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1
reply
201
views
WES variant calling with DNBSEQ-T7 - technical quality assessment
WES DNA-seq GATK variant-calling mutect2
updated 27 days ago by 4.8k • written 28 days ago by ▴ 120
0
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1
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2.3k
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Comment: Comment: 10x 3' library creates R1 and R2 fastq files with the same read length
10 weeks ago by bompipi95 ▴ 120
0
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0
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300
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Comment: Comment: Integrating single-nucleus RNA-seq and single-cell RNA-seq datasets
12 weeks ago by bompipi95 ▴ 120
0
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2
replies
300
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Integrating single-nucleus RNA-seq and single-cell RNA-seq datasets
snRNAseq single-cell scRNAseq
12 weeks ago by bompipi95 ▴ 120
0
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0
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399
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Comment: Comment: Check my understanding - difference between number of reads sequenced and Seurat
12 weeks ago by bompipi95 ▴ 120
1
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2
replies
399
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Check my understanding - difference between number of reads sequenced and Seurat nCount_RNA
scRNAseq
12 weeks ago by bompipi95 ▴ 120
0
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0
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282
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Comment: Comment: issue with merging single cell data files
3 months ago by bompipi95 ▴ 120
0
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0
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1.1k
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Comment: Comment: Rust bioinformatics projects ideas
3 months ago by bompipi95 ▴ 120
18
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10
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1.1k
views
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
3 months ago by bompipi95 ▴ 120
0
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0
replies
1.1k
views
Comment: Comment: Rust bioinformatics projects ideas
3 months ago by bompipi95 ▴ 120
0
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0
replies
1.1k
views
Comment: Comment: Rust bioinformatics projects ideas
3 months ago by bompipi95 ▴ 120
0
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0
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1.1k
views
Comment: Comment: Rust bioinformatics projects ideas
3 months ago by bompipi95 ▴ 120
0
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0
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532
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Comment: Comment: 1 is not found in chromosome sizes file
3 months ago by bompipi95 ▴ 120
2
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0
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499
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Answer: Answer: To batch correct or analyse separately?
3 months ago by bompipi95 ▴ 120
6
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3
replies
499
views
To batch correct or analyse separately?
scRNA-seq batch correction
3 months ago by bompipi95 ▴ 120
4
votes
4
replies
459
views
Aligning reads from mouse samples that express 1 human gene
realignment
updated 6 months ago by 13k • written 6 months ago by ▴ 120
0
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0
replies
459
views
Comment: Comment: Aligning reads from mouse samples that express 1 human gene
6 months ago by bompipi95 ▴ 120
1
vote
1
reply
355
views
t2t human reference genome for RNA-seq
t2t hs1 RNA-seq
updated 12 weeks ago by ▴ 660 • written 7 months ago by ▴ 120
1
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2
replies
2.9k
views
Comment: Comment: How can I learn how to create a bioinformatics pipeline?
7 months ago by bompipi95 ▴ 120
0
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0
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322
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Answer: Answer: Close correlation between differentially-expressed genes
7 months ago by bompipi95 ▴ 120
6
votes
2
replies
541
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Identifying tumor vs normal cells in scRNAseq samples
seurat CNV scRNA-seq cancer
updated 9 months ago by 3.6k • written 9 months ago by ▴ 120
2
votes
2
replies
765
views
Help with kallisto-bustools: how to interpret the inspect.json output file
pachter scRNAseq bustools kallisto
updated 12 months ago by ★ 4.2k • written 12 months ago by ▴ 120
1
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1
reply
765
views
Answer: Answer: Help with kallisto-bustools: how to interpret the inspect.json output file
12 months ago by bompipi95 ▴ 120
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