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questions
0
votes
4
replies
730
views
There are several lines in Manhattan plot.
fungi
plink
SNP
Manhattan-plot
GWAS
updated 4 months ago by
bk11
★ 2.4k • written 4 months ago by
kgwkk2
• 0
0
votes
1
reply
511
views
How can I create more accurate admixture plot like this?
admixture
vcf
plink
updated 12 months ago by
Ram
43k • written 12 months ago by
kgwkk2
• 0
1
vote
4
replies
689
views
My VCF file structure is strange and less compatible to data processing programs.
VCF
GATK
SNPs
updated 12 months ago by
Istvan Albert
100k • written 12 months ago by
kgwkk2
• 0
0
votes
0
replies
508
views
Will this method for genomic population structure analysis with VCF file help good for my work?
population-genomics
VCF
PCA
updated 12 months ago by
Ram
43k • written 12 months ago by
kgwkk2
• 0
1
vote
3
replies
763
views
antiSMASH give poor result about aflatoxin gene cluster visualization.
cluster
fungi
aflatoxin
antiSMASH
gene
12 months ago by
kgwkk2
• 0
3
votes
1
reply
623
views
Can BWA align genome fasta to fasta?
BWA
VCF
updated 13 months ago by
Istvan Albert
100k • written 13 months ago by
kgwkk2
• 0
0
votes
4
replies
1.2k
views
How can I generate VCF file with two different assembled genome fasta?
genomics
SNP
VCF
13 months ago by
kgwkk2
• 0
7
votes
7
replies
996
views
What is the major problem with this pipeline of SNPs analysis?
Genomics
Fungi
SNP
VCF
updated 13 months ago by
Ram
43k • written 13 months ago by
kgwkk2
• 0
0
votes
3
replies
714
views
Why genetic PCA method isn't applied in fungi or algae genomic study?
PCA
whole
genome
fungi
sequence
updated 15 months ago by
Jeremy Leipzig
22k • written 15 months ago by
kgwkk2
• 0
0
votes
4
replies
952
views
How can I find gene cluster containing certain gene?
gene
cluster
antiSMASH
WGS
blast
updated 21 months ago by
Ernest Bonat
▴ 10 • written 21 months ago by
kgwkk2
• 0
0
votes
1
reply
521
views
How can I find certain gene cluster from antiSMASH result?
gene
cluster
antiSMASH
penicillium
fungi
updated 21 months ago by
andres.firrincieli
3.6k • written 21 months ago by
kgwkk2
• 0
0
votes
0
replies
550
views
ERROR: mhap overlapper requires java version at least 1.8.0; you have unknown (from 'java')
path
canu
java
2.3 years ago by
kgwkk2
• 0
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