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2
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3
replies
2.5k
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How to interpate information of fastq formate read files ?
RNA-Seq alignment fasta Assembly
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 990
0
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1
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4.6k
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Comment: Comment: What's the number at the begining of some lines of transcriptome GTF file mean
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 990
0
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1
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4.6k
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Comment: C: What's the number at the begging of some lines of transcriptome GTF file means
11.1 years ago by jack ▴ 990
1
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1
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4.6k
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Comment: Comment: What's the number at the begining of some lines of transcriptome GTF file mean
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 990
0
votes
2
replies
4.6k
views
Comment: Comment: What's the number at the begining of some lines of transcriptome GTF file mean
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 990
0
votes
3
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4.6k
views
Comment: Comment: What's the number at the begining of some lines of transcriptome GTF file mean
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 990
6
votes
2
replies
16k
views
How to download Gene annotations.gtf file for Drosophila melanogaster
genomics alignment RNA-Seq next-gen
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 990
0
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1
reply
7.5k
views
Comment: C: How to write effective and stable bioinformatics pipeline in R ?
11.1 years ago by jack ▴ 990
0
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1
reply
2.7k
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What are the suitable packages for GO and GSEA to put inside of pipeline ?
RNA-Seq genome software-error R
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 990
0
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0
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11k
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Comment: Comment: How much of human genome transcribe? How much of transcriptome are non-coding RN
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 990
6
votes
7
replies
11k
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How much of human genome transcribe? How much of transcriptome are non-coding RNAs?
next-gen genomics RNA-Seq
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 990
7
votes
3
replies
4.9k
views
Looking databases for experimentaly validated miRNA-target interaction
next-gen genome RNA-Seq Assembly
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 990
0
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0
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8.1k
views
Comment: Comment: How to normalize RPKM values to use in regression models ?
updated 4.0 years ago by 45k • written 11.2 years ago by ▴ 990
3
votes
4
replies
4.8k
views
Looking for database to download transcriptome annotation file
next-gen sequence R RNA-Seq
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 990
0
votes
0
replies
4.8k
views
Comment: Comment: Looking for database to download transcriptome annotation file
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 990
2
votes
2
replies
2.5k
views
Comprehensive database for RNA-seq transcriptome sequencing ?
sequencing RNA-Seq
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 990
0
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1
reply
3.3k
views
Comment: Comment: Whay ranking count data lead to uniform distribution of the features ?
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 990
2
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3
replies
3.3k
views
Whay ranking count data lead to uniform distribution of the features ?
RNA-Seq R rna-seq next-gen sequencing
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 990
0
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0
replies
8.1k
views
Comment: Comment: How to normalize RPKM values to use in regression models ?
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 990
0
votes
1
reply
8.1k
views
Comment: Comment: How to normalize RPKM values to use in regression models ?
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 990
3
votes
3
replies
2.3k
views
What are the possible dangers of using inside sample and between samples normalization exchangeably?
next-gen R genome RNA-Seq
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 990
0
votes
0
replies
2.3k
views
Comment: C: What are the possible dangers of using inside sample and between samples normali
11.3 years ago by jack ▴ 990
6
votes
4
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3.7k
views
Does tools for removing batch effect from microarray data work for RNA-seq data as well ?
next-gen R RNA-Seq
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 990
9
votes
10
replies
8.1k
views
How to normalize RPKM values to use in regression models ?
count-data rpkm RNA-Seq regression transformation
updated 3.8 years ago by 45k • written 11.3 years ago by ▴ 990
0
votes
0
replies
8.1k
views
Comment: Comment: How to normalize RPKM values to use in regression models ?
updated 3.8 years ago by 45k • written 11.3 years ago by ▴ 990
0
votes
1
reply
8.1k
views
Comment: Comment: How to normalize RPKM values to use in regression models ?
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 990
5
votes
4
replies
3.2k
views
Why number of reads in a sample that are assigned to gene i can be modeled by a negative bionomial distribution ?
next-gen RNA-Seq Assembly
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 990
6
votes
1
reply
3.4k
views
What is the shot noise in NGS?
RNA-Seq next-gen
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 990
0
votes
1
reply
17k
views
Comment: Comment: How to plot the heatmap of gene expression for very large data set ?
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 990
0
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2
replies
17k
views
Comment: Comment: How to plot the heatmap of gene expression for very large data set ?
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 990
1
vote
1
reply
2.3k
views
Looking review paper about; From mapping NGS reads to quantification of gene expression
next-gen sequence alignment RNA-Seq
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 990
51
votes
20
replies
16k
views
15 follow
What is the best programming language for NGS data analysis pipeline development?
RNA-Seq Assembly
updated 4.1 years ago by 45k • written 11.5 years ago by ▴ 990
3
votes
0
replies
3.4k
views
How miRNA sequencing works by Illumina GA ?
RNA-Seq sequence sequencing next-gen
updated 4.1 years ago by 45k • written 11.5 years ago by ▴ 990
7
votes
11
replies
4.2k
views
Is the expression value of miRNA precursore is equivalent to it's corresponding mature miRNA form ?
RNA-Seq TCGA mirna next-gen
updated 4.1 years ago by 45k • written 11.5 years ago by ▴ 990
0
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1
reply
4.2k
views
Comment: C: Is the expression value of miRNA precursore is equivalent to it's corresponding
11.5 years ago by jack ▴ 990
19
votes
7
replies
12k
views
How to identify Gene IDs ?
R ID
updated 3.8 years ago by 45k • written 11.5 years ago by ▴ 990
0
votes
1
reply
5.3k
views
Comment: C: Statistical tests for sanity check of expression data before inferring network
11.5 years ago by jack ▴ 990
0
votes
1
reply
5.3k
views
Comment: C: Statistical tests for sanity check of expression data before inferring network
11.6 years ago by jack ▴ 990
4
votes
10
replies
5.3k
views
Statistical tests for sanity check of expression data before inferring network
sequencing genome
updated 4.1 years ago by 45k • written 11.6 years ago by ▴ 990
0
votes
1
reply
5.3k
views
Comment: C: Statistical tests for sanity check of expression data before inferring network
11.6 years ago by jack ▴ 990
5
votes
1
reply
3.3k
views
Is it good idea to use two different quatification methods from TCGA at same time ?
tcga RNA-Seq next-gen
updated 4.1 years ago by 45k • written 11.6 years ago by ▴ 990
0
votes
3
replies
2.4k
views
Comment: C: Why my all old posts are disappeared?
11.6 years ago by jack ▴ 990
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