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comments
2
votes
3
replies
2.1k
views
How to interpate information of fastq formate read files ?
RNA-Seq
alignment
fasta
Assembly
updated 2.8 years ago by
Ram
44k • written 10.1 years ago by
jack
▴ 980
0
votes
1
reply
3.7k
views
Comment:
Comment: What's the number at the begining of some lines of transcriptome GTF file mean
updated 2.8 years ago by
Ram
44k • written 10.1 years ago by
jack
▴ 980
0
votes
1
reply
3.7k
views
Comment:
C: What's the number at the begging of some lines of transcriptome GTF file means
10.1 years ago by
jack
▴ 980
1
vote
1
reply
3.7k
views
Comment:
Comment: What's the number at the begining of some lines of transcriptome GTF file mean
updated 2.8 years ago by
Ram
44k • written 10.1 years ago by
jack
▴ 980
0
votes
2
replies
3.7k
views
Comment:
Comment: What's the number at the begining of some lines of transcriptome GTF file mean
updated 2.8 years ago by
Ram
44k • written 10.1 years ago by
jack
▴ 980
0
votes
3
replies
3.7k
views
Comment:
Comment: What's the number at the begining of some lines of transcriptome GTF file mean
updated 2.8 years ago by
Ram
44k • written 10.1 years ago by
jack
▴ 980
6
votes
2
replies
15k
views
How to download Gene annotations.gtf file for Drosophila melanogaster
genomics
alignment
RNA-Seq
next-gen
updated 2.8 years ago by
Ram
44k • written 10.1 years ago by
jack
▴ 980
0
votes
1
reply
6.3k
views
Comment:
C: How to write effective and stable bioinformatics pipeline in R ?
10.1 years ago by
jack
▴ 980
0
votes
1
reply
2.4k
views
What are the suitable packages for GO and GSEA to put inside of pipeline ?
RNA-Seq
genome
software-error
R
updated 2.8 years ago by
Ram
44k • written 10.1 years ago by
jack
▴ 980
0
votes
0
replies
9.6k
views
Comment:
Comment: How much of human genome transcribe? How much of transcriptome are non-coding RN
updated 2.8 years ago by
Ram
44k • written 10.1 years ago by
jack
▴ 980
6
votes
7
replies
9.6k
views
How much of human genome transcribe? How much of transcriptome are non-coding RNAs?
next-gen
genomics
RNA-Seq
updated 2.8 years ago by
Ram
44k • written 10.1 years ago by
jack
▴ 980
7
votes
3
replies
4.5k
views
Looking databases for experimentaly validated miRNA-target interaction
next-gen
genome
RNA-Seq
Assembly
updated 2.9 years ago by
Ram
44k • written 10.2 years ago by
jack
▴ 980
0
votes
0
replies
7.3k
views
Comment:
Comment: How to normalize RPKM values to use in regression models ?
updated 3.0 years ago by
Ram
44k • written 10.2 years ago by
jack
▴ 980
3
votes
4
replies
4.3k
views
Looking for database to download transcriptome annotation file
next-gen
sequence
R
RNA-Seq
updated 2.9 years ago by
Ram
44k • written 10.3 years ago by
jack
▴ 980
0
votes
0
replies
4.3k
views
Comment:
Comment: Looking for database to download transcriptome annotation file
updated 2.9 years ago by
Ram
44k • written 10.3 years ago by
jack
▴ 980
2
votes
2
replies
2.0k
views
Comprehensive database for RNA-seq transcriptome sequencing ?
sequencing
RNA-Seq
updated 2.9 years ago by
Ram
44k • written 10.3 years ago by
jack
▴ 980
0
votes
1
reply
2.8k
views
Comment:
Comment: Whay ranking count data lead to uniform distribution of the features ?
updated 3.0 years ago by
Ram
44k • written 10.3 years ago by
jack
▴ 980
2
votes
3
replies
2.8k
views
Whay ranking count data lead to uniform distribution of the features ?
RNA-Seq
R
rna-seq
next-gen
sequencing
updated 3.0 years ago by
Ram
44k • written 10.3 years ago by
jack
▴ 980
0
votes
0
replies
7.3k
views
Comment:
Comment: How to normalize RPKM values to use in regression models ?
updated 3.0 years ago by
Ram
44k • written 10.3 years ago by
jack
▴ 980
0
votes
1
reply
7.3k
views
Comment:
Comment: How to normalize RPKM values to use in regression models ?
updated 3.0 years ago by
Ram
44k • written 10.3 years ago by
jack
▴ 980
3
votes
3
replies
2.0k
views
What are the possible dangers of using inside sample and between samples normalization exchangeably?
next-gen
R
genome
RNA-Seq
updated 3.0 years ago by
Ram
44k • written 10.3 years ago by
jack
▴ 980
0
votes
0
replies
2.0k
views
Comment:
C: What are the possible dangers of using inside sample and between samples normali
10.3 years ago by
jack
▴ 980
6
votes
4
replies
3.3k
views
Does tools for removing batch effect from microarray data work for RNA-seq data as well ?
next-gen
R
RNA-Seq
updated 3.0 years ago by
Ram
44k • written 10.3 years ago by
jack
▴ 980
9
votes
10
replies
7.3k
views
How to normalize RPKM values to use in regression models ?
count-data
rpkm
RNA-Seq
regression
transformation
updated 2.8 years ago by
Ram
44k • written 10.3 years ago by
jack
▴ 980
0
votes
0
replies
7.3k
views
Comment:
Comment: How to normalize RPKM values to use in regression models ?
updated 2.8 years ago by
Ram
44k • written 10.3 years ago by
jack
▴ 980
0
votes
1
reply
7.3k
views
Comment:
Comment: How to normalize RPKM values to use in regression models ?
updated 3.0 years ago by
Ram
44k • written 10.3 years ago by
jack
▴ 980
5
votes
4
replies
2.7k
views
Why number of reads in a sample that are assigned to gene i can be modeled by a negative bionomial distribution ?
next-gen
RNA-Seq
Assembly
updated 3.0 years ago by
Ram
44k • written 10.3 years ago by
jack
▴ 980
6
votes
1
reply
3.1k
views
What is the shot noise in NGS?
RNA-Seq
next-gen
updated 3.0 years ago by
Ram
44k • written 10.3 years ago by
jack
▴ 980
0
votes
1
reply
15k
views
Comment:
Comment: How to plot the heatmap of gene expression for very large data set ?
updated 3.0 years ago by
Ram
44k • written 10.4 years ago by
jack
▴ 980
0
votes
2
replies
15k
views
Comment:
Comment: How to plot the heatmap of gene expression for very large data set ?
updated 3.0 years ago by
Ram
44k • written 10.4 years ago by
jack
▴ 980
1
vote
1
reply
2.0k
views
Looking review paper about; From mapping NGS reads to quantification of gene expression
next-gen
sequence
alignment
RNA-Seq
updated 3.0 years ago by
Ram
44k • written 10.4 years ago by
jack
▴ 980
51
votes
20
replies
14k
views
15 follow
What is the best programming language for NGS data analysis pipeline development?
RNA-Seq
Assembly
updated 3.1 years ago by
Ram
44k • written 10.5 years ago by
jack
▴ 980
3
votes
0
replies
3.2k
views
How miRNA sequencing works by Illumina GA ?
RNA-Seq
sequence
sequencing
next-gen
updated 3.1 years ago by
Ram
44k • written 10.5 years ago by
jack
▴ 980
7
votes
11
replies
2.9k
views
Is the expression value of miRNA precursore is equivalent to it's corresponding mature miRNA form ?
RNA-Seq
TCGA
mirna
next-gen
updated 3.1 years ago by
Ram
44k • written 10.5 years ago by
jack
▴ 980
0
votes
1
reply
2.9k
views
Comment:
C: Is the expression value of miRNA precursore is equivalent to it's corresponding
10.5 years ago by
jack
▴ 980
19
votes
7
replies
11k
views
How to identify Gene IDs ?
R
ID
updated 2.8 years ago by
Ram
44k • written 10.5 years ago by
jack
▴ 980
0
votes
1
reply
4.3k
views
Comment:
C: Statistical tests for sanity check of expression data before inferring network
10.5 years ago by
jack
▴ 980
0
votes
1
reply
4.3k
views
Comment:
C: Statistical tests for sanity check of expression data before inferring network
10.5 years ago by
jack
▴ 980
4
votes
10
replies
4.3k
views
Statistical tests for sanity check of expression data before inferring network
sequencing
genome
updated 3.1 years ago by
Ram
44k • written 10.5 years ago by
jack
▴ 980
0
votes
1
reply
4.3k
views
Comment:
C: Statistical tests for sanity check of expression data before inferring network
10.5 years ago by
jack
▴ 980
5
votes
1
reply
2.6k
views
Is it good idea to use two different quatification methods from TCGA at same time ?
tcga
RNA-Seq
next-gen
updated 3.1 years ago by
Ram
44k • written 10.5 years ago by
jack
▴ 980
0
votes
3
replies
2.0k
views
Comment:
C: Why my all old posts are disappeared?
10.6 years ago by
jack
▴ 980
142 results • Page
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