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187
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Comment: Comment: scATAC-seq workflow
2 days ago by bioinformatics.girl • 0
0
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2
replies
187
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scATAC-seq workflow
Signac scATAC-seq
2 days ago by bioinformatics.girl • 0
0
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1
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406
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Comment: Comment: CoveragePlot in Signac from MACS2 Object
5 days ago by bioinformatics.girl • 0
0
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1
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406
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Comment: Comment: CoveragePlot in Signac from MACS2 Object
5 days ago by bioinformatics.girl • 0
0
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0
replies
157
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scATAC merging of files
Signac scATAC-seq
5 days ago by bioinformatics.girl • 0
0
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1
reply
406
views
Comment: Comment: CoveragePlot in Signac from MACS2 Object
5 days ago by bioinformatics.girl • 0
0
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7
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406
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CoveragePlot in Signac from MACS2 Object
Signac scATAC-seq
updated 5 days ago by 10k • written 6 days ago by • 0
0
votes
1
reply
136
views
SetAllIdents and Idents function not found
scrna-seq
updated 12 days ago by ★ 22k • written 13 days ago by • 0
0
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1
reply
438
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Comment: Comment: R Columns to Seurat Object
14 days ago by bioinformatics.girl • 0
0
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1
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438
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Comment: Comment: R Columns to Seurat Object
14 days ago by bioinformatics.girl • 0
0
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1
reply
438
views
Comment: Comment: R Columns to Seurat Object
14 days ago by bioinformatics.girl • 0
0
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7
replies
438
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R Columns to Seurat Object
seurat scrna-seq
updated 14 days ago by ★ 2.1k • written 14 days ago by • 0
0
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0
replies
497
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Comment: Comment: UMAP Cluster separation
18 days ago by bioinformatics.girl • 0
1
vote
5
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497
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UMAP Cluster separation
seurat ggplot umap scrna-seq
18 days ago by bioinformatics.girl • 0
0
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1
reply
497
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Comment: Comment: UMAP Cluster separation
26 days ago by bioinformatics.girl • 0
0
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0
replies
292
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Comment: Comment: Fisher Exact Test against two Seurat Objects
28 days ago by bioinformatics.girl • 0
0
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2
replies
292
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Fisher Exact Test against two Seurat Objects
superexacttest fisher seurat scrna-seq
28 days ago by bioinformatics.girl • 0
0
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1
reply
516
views
Comment: Comment: Error in Seurat ScaleData() function
4 weeks ago by bioinformatics.girl • 0
2
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6
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516
views
Error in Seurat ScaleData() function
seurat scrna-seq snrna-seq
updated 29 days ago by 125k • written 4 weeks ago by • 0
0
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1
reply
516
views
Comment: Comment: Error in Seurat ScaleData() function
4 weeks ago by bioinformatics.girl • 0
0
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0
replies
537
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Comment: Comment: UMAP labeling manipulation
5 weeks ago by bioinformatics.girl • 0
0
votes
3
replies
537
views
UMAP labeling manipulation
scrna-seq seurat umap
5 weeks ago by bioinformatics.girl • 0
0
votes
1
reply
298
views
Error with Tabix file
Signac atac atac-seq
updated 7 weeks ago by 152k • written 7 weeks ago by • 0
0
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0
replies
272
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Comment: Comment: Why can't I quantify the peaks (scATAC)?
8 weeks ago by bioinformatics.girl • 0
0
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2
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272
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Why can't I quantify the peaks (scATAC)?
Signac ATAC snATAC scATAC
8 weeks ago by bioinformatics.girl • 0
0
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0
replies
128
views
CellBender vs CellRanger
snrna-seq
3 months ago by bioinformatics.girl • 0
0
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0
replies
325
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Comment: Comment: When to merge scRNA datasets
3 months ago by bioinformatics.girl • 0
0
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2
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325
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When to merge scRNA datasets
scRNA-seq scRNA seurat
3 months ago by bioinformatics.girl • 0
1
vote
2
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262
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.BAM to .BED to Coverage Plots
scATAC-seq Macs scatac signac
3 months ago by bioinformatics.girl • 0
0
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0
replies
262
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Comment: Comment: .BAM to .BED to Coverage Plots
3 months ago by bioinformatics.girl • 0
0
votes
1
reply
265
views
ArchRtoSignac
archr archrtosignac archr2signac signac
updated 4 months ago by 125k • written 4 months ago by • 0
0
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0
replies
124
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Calling peaks with MACS following Bedtools
scATAC-seq bedtools signac
4 months ago by bioinformatics.girl • 0
0
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0
replies
516
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Comment: Comment: Using Harmony on scATAC Count Files
6 months ago by bioinformatics.girl • 0
0
votes
2
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516
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Comment: Comment: Using Harmony on scATAC Count Files
6 months ago by bioinformatics.girl • 0
1
vote
5
replies
516
views
Using Harmony on scATAC Count Files
scatac-seq ArchR Signac
6 months ago by bioinformatics.girl • 0
1
vote
1
reply
287
views
How to create count file from fastq files
cellranger scATAC-seq cellranger-atac
updated 6 months ago by 125k • written 6 months ago by • 0
8
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15
replies
829
views
8 follow
gunzip error: File not in gzip format
gunzip linux gzip
updated 7 months ago by 11k • written 7 months ago by • 0
0
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2
replies
829
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Comment: Comment: File not in gzip format
7 months ago by bioinformatics.girl • 0
0
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0
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829
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Comment: Comment: File not in gzip format
7 months ago by bioinformatics.girl • 0
0
votes
0
replies
829
views
Comment: Comment: File not in gzip format
7 months ago by bioinformatics.girl • 0
0
votes
1
reply
829
views
Comment: Comment: File not in gzip format
7 months ago by bioinformatics.girl • 0
0
votes
2
replies
488
views
"Object of type 'closure' is not subsettable" Error
atac-seq scatac-seq archr
updated 7 months ago by 8.6k • written 7 months ago by • 0
0
votes
0
replies
170
views
Error in H5Fopen
atac-seq scatac-seq
7 months ago by bioinformatics.girl • 0
0
votes
1
reply
1.8k
views
Comment: Comment: Column lengths differ error (ArchR)
7 months ago by bioinformatics.girl • 0
0
votes
1
reply
1.8k
views
Comment: Comment: Column lengths differ error (ArchR)
7 months ago by bioinformatics.girl • 0
0
votes
1
reply
1.8k
views
Comment: Comment: Column lengths differ error (ArchR)
7 months ago by bioinformatics.girl • 0
0
votes
2
replies
1.8k
views
Comment: Comment: Column lengths differ error (ArchR)
7 months ago by bioinformatics.girl • 0
6
votes
29
replies
1.8k
views
Column lengths differ error (ArchR)
atac-seq cellranger r archr
updated 7 months ago by 125k • written 7 months ago by • 0
0
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1
reply
1.8k
views
Comment: Comment: Column lengths differ error (ArchR)
7 months ago by bioinformatics.girl • 0
0
votes
2
replies
1.8k
views
Comment: Comment: Column lengths differ error (ArchR)
7 months ago by bioinformatics.girl • 0
62 results • Page 1 of 2
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