Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
1.2k
views
ArchR Doublet Inference to Signac
Signac scATAC-seq ArchR
updated 18 months ago by ★ 1.7k • written 2.6 years ago by ▴ 30
0
votes
1
reply
1.0k
views
Error in H5Fopen
atac-seq scatac-seq
updated 23 months ago by • 0 • written 3.3 years ago by ▴ 30
0
votes
0
replies
577
views
Performing GO analysis from Differential Peaks
clusterProfiler Signac analysis atac-seq go
2.5 years ago by bioinformatics.girl ▴ 30
0
votes
1
reply
734
views
Please help with edgeR script
edgeR
updated 2.5 years ago by ★ 1.9k • written 2.5 years ago by ▴ 30
0
votes
0
replies
703
views
Too many differential peaks derived from FindMarkers() [Signac]
Signac ATAC scATAC-seq
2.5 years ago by bioinformatics.girl ▴ 30
4
votes
5
replies
8.0k
views
edgeR, Pseudobulk scRNA-seq
seurat scrna-seq edgeR
updated 2.5 years ago by ★ 8.3k • written 2.5 years ago by ▴ 30
0
votes
1
reply
1.9k
views
Comment: Comment: Remove string from Seurat object metadata
2.5 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
1.9k
views
Comment: Comment: Remove string from Seurat object metadata
2.5 years ago by bioinformatics.girl ▴ 30
0
votes
4
replies
1.9k
views
Remove string from Seurat object metadata
seurat scrna
updated 2.5 years ago by 4.2k • written 2.5 years ago by ▴ 30
0
votes
1
reply
1.7k
views
Comment: Comment: PSEUDOBULK HELP-DE Expression in scRNA-seq
2.5 years ago by bioinformatics.girl ▴ 30
1
vote
3
replies
1.7k
views
PSEUDOBULK HELP-DE Expression in scRNA-seq
scRNA-seq seurat
updated 2.5 years ago by ★ 1.9k • written 2.5 years ago by ▴ 30
0
votes
1
reply
960
views
Remove string from Seurat Object
scRNA seurat
updated 2.5 years ago by ★ 1.7k • written 2.5 years ago by ▴ 30
0
votes
0
replies
662
views
Seurat Object Manipulation
seurat scATAC signac
2.5 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
534
views
Subsetting ATAC dataset
DARs scATAC-seq scATAC
2.5 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
648
views
scATAC integration
scatac-seq integration
updated 2.5 years ago by 154k • written 2.5 years ago by ▴ 30
0
votes
1
reply
904
views
ATAC Integration Help
scatac-seq integration atac-seq
updated 2.6 years ago by ▴ 50 • written 2.6 years ago by ▴ 30
0
votes
1
reply
2.5k
views
Comment: Comment: Seurat Metadata to Dataframe Manipulation
2.6 years ago by bioinformatics.girl ▴ 30
0
votes
3
replies
2.5k
views
Seurat Metadata to Dataframe Manipulation
rstudio seurat scrna-seq
updated 2.6 years ago by ▴ 430 • written 2.6 years ago by ▴ 30
1
vote
2
replies
1.4k
views
MACS to Signac
scatac-seq
updated 2.6 years ago by 89k • written 2.6 years ago by ▴ 30
1
vote
1
reply
960
views
MACS Error
scatac-seq peak-calling Macs
updated 2.6 years ago by 45k • written 2.6 years ago by ▴ 30
1
vote
8
replies
6.2k
views
R Columns to Seurat Object
seurat scrna-seq
updated 2.7 years ago by • 0 • written 2.7 years ago by ▴ 30
0
votes
1
reply
1.4k
views
Comment: Comment: scATAC-seq workflow
2.7 years ago by bioinformatics.girl ▴ 30
0
votes
3
replies
1.4k
views
scATAC-seq workflow
Signac scATAC-seq
updated 9 months ago by • 0 • written 2.7 years ago by ▴ 30
0
votes
1
reply
3.5k
views
Comment: Comment: CoveragePlot in Signac from MACS2 Object
2.7 years ago by bioinformatics.girl ▴ 30
0
votes
1
reply
3.5k
views
Comment: Comment: CoveragePlot in Signac from MACS2 Object
2.7 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
535
views
scATAC merging of files
Signac scATAC-seq
2.7 years ago by bioinformatics.girl ▴ 30
0
votes
1
reply
3.5k
views
Comment: Comment: CoveragePlot in Signac from MACS2 Object
2.7 years ago by bioinformatics.girl ▴ 30
0
votes
7
replies
3.5k
views
CoveragePlot in Signac from MACS2 Object
Signac scATAC-seq
updated 2.7 years ago by 11k • written 2.7 years ago by ▴ 30
0
votes
1
reply
685
views
SetAllIdents and Idents function not found
scrna-seq
updated 2.7 years ago by ★ 30k • written 2.7 years ago by ▴ 30
0
votes
1
reply
6.2k
views
Comment: Comment: R Columns to Seurat Object
2.7 years ago by bioinformatics.girl ▴ 30
0
votes
1
reply
6.2k
views
Comment: Comment: R Columns to Seurat Object
2.7 years ago by bioinformatics.girl ▴ 30
0
votes
1
reply
6.2k
views
Comment: Comment: R Columns to Seurat Object
2.7 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
2.8k
views
Comment: Comment: UMAP Cluster separation
2.7 years ago by bioinformatics.girl ▴ 30
2
votes
5
replies
2.8k
views
UMAP Cluster separation
seurat ggplot umap scrna-seq
2.7 years ago by bioinformatics.girl ▴ 30
0
votes
1
reply
2.8k
views
Comment: Comment: UMAP Cluster separation
2.7 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
1.0k
views
Comment: Comment: Fisher Exact Test against two Seurat Objects
2.7 years ago by bioinformatics.girl ▴ 30
0
votes
2
replies
1.0k
views
Fisher Exact Test against two Seurat Objects
superexacttest fisher seurat scrna-seq
2.7 years ago by bioinformatics.girl ▴ 30
0
votes
1
reply
2.8k
views
Comment: Comment: Error in Seurat ScaleData() function
2.7 years ago by bioinformatics.girl ▴ 30
2
votes
6
replies
2.8k
views
Error in Seurat ScaleData() function
seurat scrna-seq snrna-seq
updated 2.7 years ago by 154k • written 2.7 years ago by ▴ 30
0
votes
1
reply
2.8k
views
Comment: Comment: Error in Seurat ScaleData() function
2.7 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
3.7k
views
Comment: Comment: UMAP labeling manipulation
2.8 years ago by bioinformatics.girl ▴ 30
0
votes
3
replies
3.7k
views
UMAP labeling manipulation
scrna-seq seurat umap
2.8 years ago by bioinformatics.girl ▴ 30
0
votes
1
reply
1.6k
views
Error with Tabix file
Signac atac atac-seq
updated 2.8 years ago by 166k • written 2.8 years ago by ▴ 30
0
votes
0
replies
1.1k
views
Comment: Comment: Why can't I quantify the peaks (scATAC)?
2.8 years ago by bioinformatics.girl ▴ 30
0
votes
2
replies
1.1k
views
Why can't I quantify the peaks (scATAC)?
Signac ATAC snATAC scATAC
2.8 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
596
views
CellBender vs CellRanger
snrna-seq
2.9 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
875
views
Comment: Comment: When to merge scRNA datasets
2.9 years ago by bioinformatics.girl ▴ 30
0
votes
2
replies
875
views
When to merge scRNA datasets
scRNA-seq scRNA seurat
2.9 years ago by bioinformatics.girl ▴ 30
1
vote
2
replies
1.1k
views
.BAM to .BED to Coverage Plots
scATAC-seq Macs scatac signac
3.0 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
1.1k
views
Comment: Comment: .BAM to .BED to Coverage Plots
3.0 years ago by bioinformatics.girl ▴ 30
81 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6