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1.3k
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ArchR Doublet Inference to Signac
Signac scATAC-seq ArchR
updated 20 months ago by ★ 1.8k • written 2.8 years ago by ▴ 30
0
votes
1
reply
1.1k
views
Error in H5Fopen
atac-seq scatac-seq
updated 2.0 years ago by • 0 • written 3.4 years ago by ▴ 30
0
votes
0
replies
628
views
Performing GO analysis from Differential Peaks
clusterProfiler Signac analysis atac-seq go
2.6 years ago by bioinformatics.girl ▴ 30
0
votes
1
reply
776
views
Please help with edgeR script
edgeR
updated 2.6 years ago by ★ 1.9k • written 2.6 years ago by ▴ 30
0
votes
0
replies
754
views
Too many differential peaks derived from FindMarkers() [Signac]
Signac ATAC scATAC-seq
2.6 years ago by bioinformatics.girl ▴ 30
4
votes
5
replies
8.7k
views
edgeR, Pseudobulk scRNA-seq
seurat scrna-seq edgeR
updated 2.6 years ago by ★ 8.6k • written 2.6 years ago by ▴ 30
0
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1
reply
2.0k
views
Comment: Comment: Remove string from Seurat object metadata
2.6 years ago by bioinformatics.girl ▴ 30
0
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0
replies
2.0k
views
Comment: Comment: Remove string from Seurat object metadata
2.6 years ago by bioinformatics.girl ▴ 30
0
votes
4
replies
2.0k
views
Remove string from Seurat object metadata
seurat scrna
updated 2.6 years ago by 4.2k • written 2.6 years ago by ▴ 30
0
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1
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1.8k
views
Comment: Comment: PSEUDOBULK HELP-DE Expression in scRNA-seq
2.6 years ago by bioinformatics.girl ▴ 30
1
vote
3
replies
1.8k
views
PSEUDOBULK HELP-DE Expression in scRNA-seq
scRNA-seq seurat
updated 2.6 years ago by ★ 1.9k • written 2.6 years ago by ▴ 30
0
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1
reply
1.0k
views
Remove string from Seurat Object
scRNA seurat
updated 2.6 years ago by ★ 1.8k • written 2.6 years ago by ▴ 30
0
votes
0
replies
701
views
Seurat Object Manipulation
seurat scATAC signac
2.6 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
575
views
Subsetting ATAC dataset
DARs scATAC-seq scATAC
2.6 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
689
views
scATAC integration
scatac-seq integration
updated 2.6 years ago by 154k • written 2.6 years ago by ▴ 30
0
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1
reply
964
views
ATAC Integration Help
scatac-seq integration atac-seq
updated 2.7 years ago by ▴ 50 • written 2.7 years ago by ▴ 30
0
votes
1
reply
2.7k
views
Comment: Comment: Seurat Metadata to Dataframe Manipulation
2.8 years ago by bioinformatics.girl ▴ 30
0
votes
3
replies
2.7k
views
Seurat Metadata to Dataframe Manipulation
rstudio seurat scrna-seq
updated 2.8 years ago by ▴ 430 • written 2.8 years ago by ▴ 30
1
vote
2
replies
1.5k
views
MACS to Signac
scatac-seq
updated 2.8 years ago by 90k • written 2.8 years ago by ▴ 30
1
vote
1
reply
1.0k
views
MACS Error
scatac-seq peak-calling Macs
updated 2.8 years ago by 45k • written 2.8 years ago by ▴ 30
1
vote
8
replies
6.6k
views
R Columns to Seurat Object
seurat scrna-seq
updated 2.8 years ago by • 0 • written 2.8 years ago by ▴ 30
0
votes
1
reply
1.5k
views
Comment: Comment: scATAC-seq workflow
2.8 years ago by bioinformatics.girl ▴ 30
0
votes
3
replies
1.5k
views
scATAC-seq workflow
Signac scATAC-seq
updated 11 months ago by • 0 • written 2.8 years ago by ▴ 30
0
votes
1
reply
3.7k
views
Comment: Comment: CoveragePlot in Signac from MACS2 Object
2.8 years ago by bioinformatics.girl ▴ 30
0
votes
1
reply
3.7k
views
Comment: Comment: CoveragePlot in Signac from MACS2 Object
2.8 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
575
views
scATAC merging of files
Signac scATAC-seq
2.8 years ago by bioinformatics.girl ▴ 30
0
votes
1
reply
3.7k
views
Comment: Comment: CoveragePlot in Signac from MACS2 Object
2.8 years ago by bioinformatics.girl ▴ 30
0
votes
7
replies
3.7k
views
CoveragePlot in Signac from MACS2 Object
Signac scATAC-seq
updated 2.8 years ago by 11k • written 2.8 years ago by ▴ 30
0
votes
1
reply
745
views
SetAllIdents and Idents function not found
scrna-seq
updated 2.8 years ago by ★ 30k • written 2.8 years ago by ▴ 30
0
votes
1
reply
6.6k
views
Comment: Comment: R Columns to Seurat Object
2.8 years ago by bioinformatics.girl ▴ 30
0
votes
1
reply
6.6k
views
Comment: Comment: R Columns to Seurat Object
2.8 years ago by bioinformatics.girl ▴ 30
0
votes
1
reply
6.6k
views
Comment: Comment: R Columns to Seurat Object
2.8 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
2.9k
views
Comment: Comment: UMAP Cluster separation
2.8 years ago by bioinformatics.girl ▴ 30
2
votes
5
replies
2.9k
views
UMAP Cluster separation
seurat ggplot umap scrna-seq
2.8 years ago by bioinformatics.girl ▴ 30
0
votes
1
reply
2.9k
views
Comment: Comment: UMAP Cluster separation
2.9 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
1.2k
views
Comment: Comment: Fisher Exact Test against two Seurat Objects
2.9 years ago by bioinformatics.girl ▴ 30
0
votes
2
replies
1.2k
views
Fisher Exact Test against two Seurat Objects
superexacttest fisher seurat scrna-seq
2.9 years ago by bioinformatics.girl ▴ 30
0
votes
1
reply
3.0k
views
Comment: Comment: Error in Seurat ScaleData() function
2.9 years ago by bioinformatics.girl ▴ 30
2
votes
6
replies
3.0k
views
Error in Seurat ScaleData() function
seurat scrna-seq snrna-seq
updated 2.9 years ago by 154k • written 2.9 years ago by ▴ 30
0
votes
1
reply
3.0k
views
Comment: Comment: Error in Seurat ScaleData() function
2.9 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
3.9k
views
Comment: Comment: UMAP labeling manipulation
2.9 years ago by bioinformatics.girl ▴ 30
0
votes
3
replies
3.9k
views
UMAP labeling manipulation
scrna-seq seurat umap
2.9 years ago by bioinformatics.girl ▴ 30
0
votes
1
reply
1.7k
views
Error with Tabix file
Signac atac atac-seq
updated 2.9 years ago by 166k • written 2.9 years ago by ▴ 30
0
votes
0
replies
1.2k
views
Comment: Comment: Why can't I quantify the peaks (scATAC)?
3.0 years ago by bioinformatics.girl ▴ 30
0
votes
2
replies
1.2k
views
Why can't I quantify the peaks (scATAC)?
Signac ATAC snATAC scATAC
3.0 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
628
views
CellBender vs CellRanger
snrna-seq
3.1 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
937
views
Comment: Comment: When to merge scRNA datasets
3.1 years ago by bioinformatics.girl ▴ 30
0
votes
2
replies
937
views
When to merge scRNA datasets
scRNA-seq scRNA seurat
3.1 years ago by bioinformatics.girl ▴ 30
1
vote
2
replies
1.2k
views
.BAM to .BED to Coverage Plots
scATAC-seq Macs scatac signac
3.1 years ago by bioinformatics.girl ▴ 30
0
votes
0
replies
1.2k
views
Comment: Comment: .BAM to .BED to Coverage Plots
3.1 years ago by bioinformatics.girl ▴ 30
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