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Comment: C: Combine .bed files and keep columns / headers
6.5 years ago by fr ▴ 220
0
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1
reply
4.1k
views
Comment: C: Combine .bed files and keep columns / headers
6.5 years ago by fr ▴ 220
7
votes
9
replies
4.1k
views
Combine .bed files and keep columns / headers
bedtools bedops bedmap
updated 6.5 years ago by 90k • written 6.5 years ago by ▴ 220
0
votes
1
reply
5.8k
views
Comment: C: Combining multiple bedfiles
6.5 years ago by fr ▴ 220
0
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1
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5.8k
views
Comment: C: Combining multiple bedfiles
6.5 years ago by fr ▴ 220
2
votes
1
reply
1.4k
views
Question about Bedtools intersect: allows for multiple matches?
bedtools pybedtools
updated 6.5 years ago by ★ 19k • written 6.5 years ago by ▴ 220
0
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0
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2.8k
views
pyBedTools.BedTools.intersect() not working on dataframe
bedtools pybedtools
6.5 years ago by fr ▴ 220
4
votes
5
replies
3.6k
views
Edit score column in bed file
bed bedtools
updated 6.6 years ago by 36k • written 6.6 years ago by ▴ 220
0
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0
replies
3.6k
views
Comment: C: Edit score column in bed file
6.6 years ago by fr ▴ 220
2
votes
1
reply
4.9k
views
Homer not finding any genomes?
homer hic ChIP-Seq
6.7 years ago by fr ▴ 220
2
votes
0
replies
5.0k
views
Answer: A: Enrichr : how to provide background as gene symbols or int ?
6.7 years ago by fr ▴ 220
2
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1
reply
5.0k
views
Enrichr : how to provide background as gene symbols or int ?
gene RNA-Seq microarray gsea
6.7 years ago by fr ▴ 220
4
votes
9
replies
2.7k
views
Genome-wide CRISPR/Cas9 and gene expression?
crispr cas9 microarray gene expression
updated 7.5 years ago by 12k • written 7.6 years ago by ▴ 220
0
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1
reply
2.7k
views
Comment: C: Genome-wide CRISPR/Cas9 and gene expression?
7.5 years ago by fr ▴ 220
0
votes
0
replies
2.7k
views
Comment: C: Genome-wide CRISPR/Cas9 and gene expression?
7.5 years ago by fr ▴ 220
1
vote
3
replies
3.0k
views
Where to find CCLE metadata?
ccle RNA-Seq
updated 7.5 years ago by 20 • written 7.5 years ago by ▴ 220
0
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0
replies
3.0k
views
Comment: C: Where to find CCLE metadata?
7.5 years ago by fr ▴ 220
0
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1
reply
3.0k
views
Comment: C: Where to find CCLE metadata?
7.5 years ago by fr ▴ 220
0
votes
1
reply
9.0k
views
Comment: C: RNA-seq data from CCLE - where are the details?
7.5 years ago by fr ▴ 220
0
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1
reply
9.0k
views
Comment: C: RNA-seq data from CCLE - where are the details?
7.5 years ago by fr ▴ 220
0
votes
1
reply
9.0k
views
Comment: C: RNA-seq data from CCLE - where are the details?
7.5 years ago by fr ▴ 220
3
votes
14
replies
9.0k
views
RNA-seq data from CCLE - where are the details?
ccle RNA-Seq gene
updated 7.5 years ago by 89k • written 7.5 years ago by ▴ 220
0
votes
1
reply
2.7k
views
Comment: C: Genome-wide CRISPR/Cas9 and gene expression?
7.6 years ago by fr ▴ 220
0
votes
0
replies
1.3k
views
Error in PIANO
ChIP-Seq R PIANO
8.0 years ago by fr ▴ 220
0
votes
1
reply
2.4k
views
Accessing legacy data in GDC
rna-seq R tcgabiolinks
updated 8.0 years ago by 89k • written 8.5 years ago by ▴ 220
0
votes
2
replies
1.9k
views
ID mapping: from Rat codelink to Entrez
ChIP-Seq
8.0 years ago by fr ▴ 220
0
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0
replies
1.9k
views
Comment: C: ID mapping: from Rat codelink to Entrez
8.0 years ago by fr ▴ 220
1
vote
0
replies
5.1k
views
Comment: C: Is there way to do batchquery and obtain ATC codes for pubchem CIDs?
8.0 years ago by fr ▴ 220
0
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0
replies
5.1k
views
Comment: C: Is there way to do batchquery and obtain ATC codes for pubchem CIDs?
8.0 years ago by fr ▴ 220
0
votes
1
reply
76k
views
Comment: C: Converting Affymetrix Probes To Gene Ids
8.0 years ago by fr ▴ 220
0
votes
1
reply
3.4k
views
Comment: C: Drug database for cell line experiments with before vs after treatment responses
8.0 years ago by fr ▴ 220
0
votes
1
reply
3.4k
views
Comment: C: Drug database for cell line experiments with before vs after treatment responses
8.0 years ago by fr ▴ 220
4
votes
5
replies
3.4k
views
Drug database for cell line experiments with before vs after treatment responses
cmap RNA-Seq ChIP-Seq
updated 8.0 years ago by ▴ 790 • written 8.0 years ago by ▴ 220
0
votes
1
reply
3.0k
views
Comment: C: Perturbation scan id in Connectivity Map data
8.0 years ago by fr ▴ 220
3
votes
1
reply
1.6k
views
Comment: C: theory behind the differential expression
8.0 years ago by fr ▴ 220
0
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1
reply
3.3k
views
Comment: C: Correlating gene expression with qualitative variables
8.4 years ago by fr ▴ 220
5
votes
3
replies
3.3k
views
Correlating gene expression with qualitative variables
RNA-Seq R correlation
updated 8.4 years ago by 11k • written 8.4 years ago by ▴ 220
0
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0
replies
6.0k
views
Comment: C: How to plot PCA with fpkm values
8.6 years ago by fr ▴ 220
0
votes
0
replies
2.8k
views
Answer: A: R: Inconsistency between data from TCGAbiolinks and GDC (does TCGAbiolinks retri
8.8 years ago by fr ▴ 220
0
votes
1
reply
2.8k
views
R: Inconsistency between data from TCGAbiolinks and GDC (does TCGAbiolinks retrieve Legacy data by default?)
r genome rna-seq
8.8 years ago by fr ▴ 220
0
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0
replies
4.9k
views
Comment: C: Is it possible to download cancer, normal, and matched tissue data from GDC? Fro
9.1 years ago by fr ▴ 220
0
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0
replies
3.3k
views
Comment: C: How to query and download the WGS and gene expression data from paired solid Nor
9.1 years ago by fr ▴ 220
5
votes
2
replies
4.9k
views
Is it possible to download cancer, normal, and matched tissue data from GDC? From same patient samples? How?
gdc
9.1 years ago by fr ▴ 220
1
vote
0
replies
2.2k
views
Comment: C: Gene Ontology process to Ensembl (in Perl)?
9.1 years ago by fr ▴ 220
0
votes
1
reply
2.2k
views
Comment: C: Gene Ontology process to Ensembl (in Perl)?
9.1 years ago by fr ▴ 220
0
votes
0
replies
2.2k
views
Comment: C: Gene Ontology process to Ensembl (in Perl)?
9.1 years ago by fr ▴ 220
3
votes
6
replies
2.2k
views
Gene Ontology process to Ensembl (in Perl)?
gene ontology ensembl
updated 9.1 years ago by ★ 1.2k • written 9.1 years ago by ▴ 220
9
votes
23
replies
11k
views
How to retrieve gene sequences and their products from NCBI's FTP?
genome gene
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 220
0
votes
2
replies
3.7k
views
How to process reverse sequences?
genome sequence
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 220
0
votes
0
replies
1.9k
views
Getting intergenic sequences using BioPerl?
perl genome sequence
updated 3.3 years ago by 45k • written 10.3 years ago by ▴ 220
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