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0
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0
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395
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Different colors for different features in IGV
igv color
12 months ago by mark.rose ▴ 50
1
vote
1
reply
662
views
bcftools error on freebayes vcfs
vcf freebayes bcftools
updated 16 months ago by 44k • written 2.4 years ago by ▴ 50
0
votes
0
replies
793
views
PacBio's variantCaller's vcf inconsistent with it's consensus sequence
pacbio variant variantCaller vcf consensus
updated 3.9 years ago by 20 • written 3.9 years ago by ▴ 50
1
vote
1
reply
746
views
gatk haplotypecaller report a mush lower coverage than seen in alignment
gatk alignment dp coverage haplotypecaller
4.0 years ago by mark.rose ▴ 50
0
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0
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1.1k
views
Comment: C: VCFs appear inconsistent with view of alignment
4.0 years ago by mark.rose ▴ 50
0
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2
replies
1.1k
views
VCFs appear inconsistent with view of alignment
vcf gatk freebayes bbmap igv
4.0 years ago by mark.rose ▴ 50
0
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0
replies
1.2k
views
Comment: C: genome in IGV session file
4.2 years ago by mark.rose ▴ 50
0
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2
replies
1.2k
views
genome in IGV session file
igv session xml genome
4.2 years ago by mark.rose ▴ 50
0
votes
5
replies
5.1k
views
freebayes haplotype calling (phased variants)
freebayes haplotype phase phased variant
updated 4.5 years ago by ▴ 10 • written 8.6 years ago by ▴ 50
0
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0
replies
960
views
Comment: C: anomalous alignment with bowtie2
4.7 years ago by mark.rose ▴ 50
0
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3
replies
960
views
anomalous alignment with bowtie2
bowtie bowtie2 blast score alignment
updated 4.7 years ago by 146k • written 4.7 years ago by ▴ 50
2
votes
13
replies
5.4k
views
unexpected bowtie2 unpaired alignment behavior
alignment
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 50
0
votes
1
reply
1.8k
views
BBMAP fails to find secondary alignment
bbmap secondary
updated 5.9 years ago by 20 • written 5.9 years ago by ▴ 50
0
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0
replies
2.3k
views
Comment: C: BBMAP paired end alignment problem
5.9 years ago by mark.rose ▴ 50
0
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1
reply
2.3k
views
Comment: C: BBMAP paired end alignment problem
5.9 years ago by mark.rose ▴ 50
1
vote
6
replies
2.3k
views
BBMAP paired end alignment problem
BBMAP bbmap align paired-end
updated 5.9 years ago by 35k • written 5.9 years ago by ▴ 50
0
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0
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2.3k
views
Comment: C: BBMAP paired end alignment problem
5.9 years ago by mark.rose ▴ 50
0
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0
replies
4.6k
views
Comment: C: Picard ExtractIlluminaBarcodes error
6.3 years ago by mark.rose ▴ 50
0
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1
reply
4.6k
views
Comment: C: Picard ExtractIlluminaBarcodes error
6.3 years ago by mark.rose ▴ 50
0
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1
reply
4.6k
views
Comment: C: Picard ExtractIlluminaBarcodes error
6.3 years ago by mark.rose ▴ 50
1
vote
1
reply
4.6k
views
Answer: A: Picard ExtractIlluminaBarcodes error
updated 6.3 years ago by 146k • written 6.3 years ago by ▴ 50
2
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12
replies
4.6k
views
Picard ExtractIlluminaBarcodes error
picard extractilluminabarcodes demultiplex
6.3 years ago by mark.rose ▴ 50
0
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0
replies
4.6k
views
Comment: C: Picard ExtractIlluminaBarcodes error
6.3 years ago by mark.rose ▴ 50
0
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0
replies
4.6k
views
Comment: C: Picard ExtractIlluminaBarcodes error
6.3 years ago by mark.rose ▴ 50
0
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0
replies
1.9k
views
Comment: C: IGV SNP glyph question
6.5 years ago by mark.rose ▴ 50
0
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12
replies
1.9k
views
IGV SNP glyph question
igv SNP
updated 6.5 years ago by 16k • written 6.5 years ago by ▴ 50
0
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1
reply
1.9k
views
Comment: C: IGV SNP glyph question
updated 6.5 years ago by 44k • written 6.5 years ago by ▴ 50
0
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1
reply
1.9k
views
Comment: C: IGV SNP glyph question
6.5 years ago by mark.rose ▴ 50
0
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0
replies
1.9k
views
Comment: C: IGV SNP glyph question
6.5 years ago by mark.rose ▴ 50
0
votes
2
replies
1.9k
views
Comment: C: IGV SNP glyph question
updated 6.5 years ago by 44k • written 6.5 years ago by ▴ 50
0
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2
replies
1.9k
views
Comment: C: IGV SNP glyph question
updated 6.5 years ago by 44k • written 6.5 years ago by ▴ 50
0
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0
replies
4.1k
views
Comment: C: bbmap paired-end alignment problem
6.6 years ago by mark.rose ▴ 50
0
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1
reply
4.1k
views
Comment: C: bbmap paired-end alignment problem
6.6 years ago by mark.rose ▴ 50
0
votes
2
replies
4.1k
views
Comment: C: bbmap paired-end alignment problem
updated 6.6 years ago by 146k • written 6.6 years ago by ▴ 50
0
votes
8
replies
4.1k
views
bbmap paired-end alignment problem
bbmap align paired-end
6.6 years ago by mark.rose ▴ 50
0
votes
0
replies
5.1k
views
Comment: C: freebayes haplotype calling (phased variants)
6.6 years ago by mark.rose ▴ 50
0
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1
reply
5.1k
views
Comment: C: freebayes haplotype calling (phased variants)
6.7 years ago by mark.rose ▴ 50
0
votes
0
replies
1.6k
views
Comment: C: jellyfish configure script problem
6.7 years ago by mark.rose ▴ 50
0
votes
2
replies
1.6k
views
jellyfish configure script problem
jellyfish configure kraken
6.7 years ago by mark.rose ▴ 50
1
vote
7
replies
2.2k
views
IGV tracks fail to render even after zooming
igv track
updated 6.9 years ago by ▴ 300 • written 6.9 years ago by ▴ 50
0
votes
0
replies
2.2k
views
Comment: C: IGV tracks fail to render even after zooming
6.9 years ago by mark.rose ▴ 50
0
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1
reply
2.2k
views
Comment: C: IGV tracks fail to render even after zooming
6.9 years ago by mark.rose ▴ 50
0
votes
1
reply
2.2k
views
Comment: C: IGV tracks fail to render even after zooming
6.9 years ago by mark.rose ▴ 50
0
votes
5
replies
2.9k
views
calling phased variants
variants phase freebayes platypus problem
updated 7.5 years ago by ▴ 20 • written 8.5 years ago by ▴ 50
1
vote
0
replies
3.1k
views
Comment: C: INDEL left alignment in bam and vcf
7.7 years ago by mark.rose ▴ 50
3
votes
2
replies
3.1k
views
INDEL left alignment in bam and vcf
aligner bowtie bwa blasr indel
updated 7.7 years ago by 20k • written 7.7 years ago by ▴ 50
0
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0
replies
1.4k
views
Comment: C: BG7 usage for bacterial genome annotation
7.9 years ago by mark.rose ▴ 50
0
votes
0
replies
3.5k
views
Comment: C: varscan misses alternate variant alleles
7.9 years ago by mark.rose ▴ 50
0
votes
1
reply
3.5k
views
Comment: C: varscan misses alternate variant alleles
7.9 years ago by mark.rose ▴ 50
0
votes
1
reply
3.5k
views
Comment: C: varscan misses alternate variant alleles
7.9 years ago by mark.rose ▴ 50
81 results • Page 1 of 2
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