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1
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431
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bcftools error on freebayes vcfs
vcf freebayes bcftools
updated 3 months ago by 40k • written 16 months ago by ▴ 50
0
votes
0
replies
650
views
PacBio's variantCaller's vcf inconsistent with it's consensus sequence
pacbio variant variantCaller vcf consensus
updated 2.8 years ago by 20 • written 2.9 years ago by ▴ 50
1
vote
1
reply
592
views
gatk haplotypecaller report a mush lower coverage than seen in alignment
gatk alignment dp coverage haplotypecaller
3.0 years ago by mark.rose ▴ 50
0
votes
0
replies
846
views
Comment: C: VCFs appear inconsistent with view of alignment
3.0 years ago by mark.rose ▴ 50
0
votes
2
replies
846
views
VCFs appear inconsistent with view of alignment
vcf gatk freebayes bbmap igv
3.0 years ago by mark.rose ▴ 50
0
votes
0
replies
850
views
Comment: C: genome in IGV session file
3.2 years ago by mark.rose ▴ 50
0
votes
2
replies
850
views
genome in IGV session file
igv session xml genome
3.2 years ago by mark.rose ▴ 50
0
votes
5
replies
4.5k
views
freebayes haplotype calling (phased variants)
freebayes haplotype phase phased variant
updated 3.5 years ago by ▴ 10 • written 7.5 years ago by ▴ 50
0
votes
0
replies
726
views
Comment: C: anomalous alignment with bowtie2
3.7 years ago by mark.rose ▴ 50
0
votes
3
replies
726
views
anomalous alignment with bowtie2
bowtie bowtie2 blast score alignment
updated 3.7 years ago by 135k • written 3.7 years ago by ▴ 50
2
votes
13
replies
4.7k
views
unexpected bowtie2 unpaired alignment behavior
alignment
updated 21 months ago by 40k • written 9.1 years ago by ▴ 50
0
votes
1
reply
1.6k
views
BBMAP fails to find secondary alignment
bbmap secondary
updated 4.9 years ago by 20 • written 4.9 years ago by ▴ 50
0
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0
replies
2.0k
views
Comment: C: BBMAP paired end alignment problem
4.9 years ago by mark.rose ▴ 50
0
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1
reply
2.0k
views
Comment: C: BBMAP paired end alignment problem
4.9 years ago by mark.rose ▴ 50
1
vote
6
replies
2.0k
views
BBMAP paired end alignment problem
BBMAP bbmap align paired-end
updated 4.9 years ago by 34k • written 4.9 years ago by ▴ 50
0
votes
0
replies
2.0k
views
Comment: C: BBMAP paired end alignment problem
4.9 years ago by mark.rose ▴ 50
0
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0
replies
4.0k
views
Comment: C: Picard ExtractIlluminaBarcodes error
5.3 years ago by mark.rose ▴ 50
0
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1
reply
4.0k
views
Comment: C: Picard ExtractIlluminaBarcodes error
5.3 years ago by mark.rose ▴ 50
0
votes
1
reply
4.0k
views
Comment: C: Picard ExtractIlluminaBarcodes error
5.3 years ago by mark.rose ▴ 50
1
vote
1
reply
4.0k
views
Answer: A: Picard ExtractIlluminaBarcodes error
updated 5.3 years ago by 135k • written 5.3 years ago by ▴ 50
2
votes
12
replies
4.0k
views
Picard ExtractIlluminaBarcodes error
picard extractilluminabarcodes demultiplex
5.3 years ago by mark.rose ▴ 50
0
votes
0
replies
4.0k
views
Comment: C: Picard ExtractIlluminaBarcodes error
5.3 years ago by mark.rose ▴ 50
0
votes
0
replies
4.0k
views
Comment: C: Picard ExtractIlluminaBarcodes error
5.3 years ago by mark.rose ▴ 50
0
votes
0
replies
1.4k
views
Comment: C: IGV SNP glyph question
5.4 years ago by mark.rose ▴ 50
0
votes
12
replies
1.4k
views
IGV SNP glyph question
igv SNP
updated 5.4 years ago by 16k • written 5.4 years ago by ▴ 50
0
votes
1
reply
1.4k
views
Comment: C: IGV SNP glyph question
updated 5.4 years ago by 40k • written 5.4 years ago by ▴ 50
0
votes
1
reply
1.4k
views
Comment: C: IGV SNP glyph question
5.4 years ago by mark.rose ▴ 50
0
votes
0
replies
1.4k
views
Comment: C: IGV SNP glyph question
5.4 years ago by mark.rose ▴ 50
0
votes
2
replies
1.4k
views
Comment: C: IGV SNP glyph question
updated 5.4 years ago by 40k • written 5.4 years ago by ▴ 50
0
votes
2
replies
1.4k
views
Comment: C: IGV SNP glyph question
updated 5.4 years ago by 40k • written 5.4 years ago by ▴ 50
0
votes
0
replies
3.4k
views
Comment: C: bbmap paired-end alignment problem
5.6 years ago by mark.rose ▴ 50
0
votes
1
reply
3.4k
views
Comment: C: bbmap paired-end alignment problem
5.6 years ago by mark.rose ▴ 50
0
votes
2
replies
3.4k
views
Comment: C: bbmap paired-end alignment problem
updated 5.6 years ago by 135k • written 5.6 years ago by ▴ 50
0
votes
8
replies
3.4k
views
bbmap paired-end alignment problem
bbmap align paired-end
5.6 years ago by mark.rose ▴ 50
0
votes
0
replies
4.5k
views
Comment: C: freebayes haplotype calling (phased variants)
5.6 years ago by mark.rose ▴ 50
0
votes
1
reply
4.5k
views
Comment: C: freebayes haplotype calling (phased variants)
5.6 years ago by mark.rose ▴ 50
0
votes
0
replies
1.4k
views
Comment: C: jellyfish configure script problem
5.7 years ago by mark.rose ▴ 50
0
votes
2
replies
1.4k
views
jellyfish configure script problem
jellyfish configure kraken
5.7 years ago by mark.rose ▴ 50
1
vote
7
replies
1.7k
views
IGV tracks fail to render even after zooming
igv track
updated 5.9 years ago by ▴ 300 • written 5.9 years ago by ▴ 50
0
votes
0
replies
1.7k
views
Comment: C: IGV tracks fail to render even after zooming
5.9 years ago by mark.rose ▴ 50
0
votes
1
reply
1.7k
views
Comment: C: IGV tracks fail to render even after zooming
5.9 years ago by mark.rose ▴ 50
0
votes
1
reply
1.7k
views
Comment: C: IGV tracks fail to render even after zooming
5.9 years ago by mark.rose ▴ 50
0
votes
5
replies
2.6k
views
calling phased variants
variants phase freebayes platypus problem
updated 6.5 years ago by ▴ 20 • written 7.5 years ago by ▴ 50
1
vote
0
replies
2.7k
views
Comment: C: INDEL left alignment in bam and vcf
6.6 years ago by mark.rose ▴ 50
3
votes
2
replies
2.7k
views
INDEL left alignment in bam and vcf
aligner bowtie bwa blasr indel
updated 6.7 years ago by 18k • written 6.7 years ago by ▴ 50
0
votes
0
replies
1.3k
views
Comment: C: BG7 usage for bacterial genome annotation
6.9 years ago by mark.rose ▴ 50
0
votes
0
replies
3.0k
views
Comment: C: varscan misses alternate variant alleles
6.9 years ago by mark.rose ▴ 50
0
votes
1
reply
3.0k
views
Comment: C: varscan misses alternate variant alleles
6.9 years ago by mark.rose ▴ 50
0
votes
1
reply
3.0k
views
Comment: C: varscan misses alternate variant alleles
6.9 years ago by mark.rose ▴ 50
0
votes
14
replies
3.0k
views
varscan misses alternate variant alleles
variant insertion deletion mpileup freebayes
6.9 years ago by mark.rose ▴ 50
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