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407
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Comment: Comment: DEseq2 with different designs matrix
10 days ago by QX ▴ 60
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3
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407
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DEseq2 with different designs matrix
DEseq2
10 days ago by QX ▴ 60
0
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0
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121
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Different position for same gene using annotatePeak from ChIPseeker
ChIPseeker ATACseq
16 days ago by QX ▴ 60
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0
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130
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plotHeatmap from deeptools explain
atac-seq
16 days ago by QX ▴ 60
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0
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420
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Comment: Comment: difference between macs2 callpeak using bam and bed file
25 days ago by QX ▴ 60
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1
reply
420
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Comment: Comment: difference between macs2 callpeak using bam and bed file
25 days ago by QX ▴ 60
5
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4
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420
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difference between macs2 callpeak using bam and bed file
macs2 atac-seq
25 days ago by QX ▴ 60
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0
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346
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Comment: Comment: trimming 151bp to shorter k-mer in ATAC-seq analysis
28 days ago by QX ▴ 60
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0
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3.1k
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Comment: Comment: ATAC-seq peak calling
28 days ago by QX ▴ 60
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1
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406
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Comment: Comment: call peak for all replicates in all conditions using macs2
28 days ago by QX ▴ 60
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0
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406
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Comment: Comment: call peak for all replicates in all conditions using macs2
28 days ago by QX ▴ 60
0
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1
reply
346
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Comment: Comment: trimming 151bp to shorter k-mer in ATAC-seq analysis
28 days ago by QX ▴ 60
2
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5
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406
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call peak for all replicates in all conditions using macs2
macs2 ATACseq
updated 28 days ago by ▴ 150 • written 29 days ago by ▴ 60
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0
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2.0k
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Comment: Comment: How get density plot TSS region for genes of interest
29 days ago by QX ▴ 60
1
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4
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346
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trimming 151bp to shorter k-mer in ATAC-seq analysis
ATAC-seq
28 days ago by QX ▴ 60
0
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0
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9.1k
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Comment: Comment: Using featureCounts and DESeq2 to look at differences between ATAC-seq condition
29 days ago by QX ▴ 60
0
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1
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2.0k
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Comment: Comment: How get density plot TSS region for genes of interest
29 days ago by QX ▴ 60
0
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1
reply
520
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Comment: Comment: which bed file should be used for deeptools computeMatrix
5 weeks ago by QX ▴ 60
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1
reply
520
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Comment: Comment: which bed file should be used for deeptools computeMatrix
5 weeks ago by QX ▴ 60
3
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6
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520
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which bed file should be used for deeptools computeMatrix
atac-seq deeptools
updated 4 weeks ago by ★ 4.3k • written 5 weeks ago by ▴ 60
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0
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2.0k
views
Comment: Comment: Plotting chip signal at TSSs with deeptools
5 weeks ago by QX ▴ 60
0
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0
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157
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reference-point setting from computeMatrix
ATACseq
5 weeks ago by QX ▴ 60
0
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0
replies
124
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which distance used for kmeans in deeptools plotHeatmap
atac deeptools
5 weeks ago by QX ▴ 60
1
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1
reply
206
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merge replicate for bigWig files from macs2 peak calling
ATAC-seq
updated 5 weeks ago by 84k • written 5 weeks ago by ▴ 60
0
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0
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286
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Comment: Comment: MACS2 for multiple conditions in ATACseq analysis
6 weeks ago by QX ▴ 60
0
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1
reply
286
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Comment: Comment: MACS2 for multiple conditions in ATACseq analysis
6 weeks ago by QX ▴ 60
0
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0
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5.8k
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Comment: Comment: How to create SAF from text file for FeatureCounts
6 weeks ago by QX ▴ 60
0
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1
reply
495
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Comment: Comment: featureCounts output
6 weeks ago by QX ▴ 60
4
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4
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286
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MACS2 for multiple conditions in ATACseq analysis
mac2
6 weeks ago by QX ▴ 60
4
votes
4
replies
506
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Increase the memory and core usage of R
R
updated 6 weeks ago by ★ 28k • written 7 weeks ago by ▴ 60
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0
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366
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Comment: Comment: is that statistical correct to use DEseq2 for proteomics data
7 weeks ago by QX ▴ 60
3
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2
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366
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is that statistical correct to use DEseq2 for proteomics data
proteomics DEseq2
updated 7 weeks ago by 84k • written 7 weeks ago by ▴ 60
0
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0
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506
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Comment: Comment: Increase the memory and core usage of R
7 weeks ago by QX ▴ 60
1
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0
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495
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Comment: Comment: featureCounts output
7 weeks ago by QX ▴ 60
4
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8
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495
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featureCounts output
macs2 featureCounts
updated 6 weeks ago by ★ 1.3k • written 7 weeks ago by ▴ 60
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0
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495
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Comment: Comment: featureCounts output
7 weeks ago by QX ▴ 60
0
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0
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495
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Comment: Comment: featureCounts output
7 weeks ago by QX ▴ 60
0
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1
reply
438
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Comment: Comment: input for gatk VariantAnnotator --dbsnp
8 weeks ago by QX ▴ 60
0
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0
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438
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Comment: Comment: input for gatk VariantAnnotator --dbsnp
8 weeks ago by QX ▴ 60
0
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1
reply
438
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Comment: Comment: input for gatk VariantAnnotator --dbsnp
8 weeks ago by QX ▴ 60
2
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6
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438
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input for gatk VariantAnnotator --dbsnp
VariantAnnotator gatk
updated 8 weeks ago by 145k • written 8 weeks ago by ▴ 60
0
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0
replies
435
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Comment: Comment: best way to submit hpc job using snakemake
9 weeks ago by QX ▴ 60
0
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1
reply
435
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Comment: Comment: best way to submit hpc job using snakemake
9 weeks ago by QX ▴ 60
5
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5
replies
435
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best way to submit hpc job using snakemake
snakemake
9 weeks ago by QX ▴ 60
0
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1
reply
290
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Comment: Comment: snakemake config file with path
9 weeks ago by QX ▴ 60
1
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3
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290
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snakemake config file with path
snakemake
updated 9 weeks ago by ▴ 140 • written 9 weeks ago by ▴ 60
0
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2
replies
290
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how to colorize snakemake editing text
snakemake
updated 10 weeks ago by 55k • written 10 weeks ago by ▴ 60
1
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1
reply
344
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Comment: Comment: Any recommended way to view scRNAseq results in an interactive format?
10 weeks ago by QX ▴ 60
0
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0
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525
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Comment: Comment: Calling variants/SNP for single-cell RNA-seq data
11 weeks ago by QX ▴ 60
3
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5
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525
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Calling variants/SNP for single-cell RNA-seq data
SNP scRNAseq
updated 17 days ago by ▴ 420 • written 11 weeks ago by ▴ 60
107 results • Page 1 of 3
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