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3
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2
replies
298
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Alignment algorithm for DNA sequencing
sequencing
data
DNA
updated 6 days ago by
ATpoint
87k • written 6 days ago by
QX
▴ 70
3
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6
replies
543
views
Is there a proper way to choose bins in barplot
visualization
plot
bar
9 weeks ago by
QX
▴ 70
2
votes
2
replies
332
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statistical testing for MS/MS proteomics bulk samples
DEG
proteomics
updated 4 months ago by
ATpoint
87k • written 4 months ago by
QX
▴ 70
2
votes
4
replies
630
views
coordinate vs contributions for the variables in PCA using FactoMineR
PCA
updated 4 months ago by
Bastien Hervé
6.1k • written 4 months ago by
QX
▴ 70
3
votes
6
replies
897
views
PCA for count data
PCA
5 months ago by
QX
▴ 70
0
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3
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673
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DEseq2 with different designs matrix
DEseq2
6 months ago by
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▴ 70
0
votes
0
replies
240
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Different position for same gene using annotatePeak from ChIPseeker
ChIPseeker
ATACseq
6 months ago by
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▴ 70
0
votes
0
replies
230
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plotHeatmap from deeptools explain
atac-seq
6 months ago by
QX
▴ 70
5
votes
4
replies
1.2k
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difference between macs2 callpeak using bam and bed file
macs2
atac-seq
7 months ago by
QX
▴ 70
2
votes
5
replies
779
views
call peak for all replicates in all conditions using macs2
macs2
ATACseq
updated 7 months ago by
zau saa
▴ 150 • written 7 months ago by
QX
▴ 70
1
vote
4
replies
666
views
trimming 151bp to shorter k-mer in ATAC-seq analysis
ATAC-seq
7 months ago by
QX
▴ 70
3
votes
6
replies
1.1k
views
which bed file should be used for deeptools computeMatrix
atac-seq
deeptools
updated 7 months ago by
Ming Tommy Tang
★ 4.6k • written 7 months ago by
QX
▴ 70
0
votes
0
replies
271
views
reference-point setting from computeMatrix
ATACseq
7 months ago by
QX
▴ 70
0
votes
0
replies
237
views
which distance used for kmeans in deeptools plotHeatmap
atac
deeptools
7 months ago by
QX
▴ 70
1
vote
1
reply
462
views
merge replicate for bigWig files from macs2 peak calling
ATAC-seq
updated 7 months ago by
ATpoint
87k • written 7 months ago by
QX
▴ 70
4
votes
4
replies
669
views
MACS2 for multiple conditions in ATACseq analysis
mac2
7 months ago by
QX
▴ 70
4
votes
4
replies
874
views
Increase the memory and core usage of R
R
updated 7 months ago by
Mensur Dlakic
★ 29k • written 7 months ago by
QX
▴ 70
3
votes
2
replies
655
views
is that statistical correct to use DEseq2 for proteomics data
proteomics
DEseq2
updated 7 months ago by
ATpoint
87k • written 7 months ago by
QX
▴ 70
4
votes
8
replies
1.1k
views
featureCounts output
macs2
featureCounts
updated 7 months ago by
rfran010
★ 1.4k • written 8 months ago by
QX
▴ 70
2
votes
6
replies
881
views
input for gatk VariantAnnotator --dbsnp
VariantAnnotator
gatk
updated 8 months ago by
GenoMax
150k • written 8 months ago by
QX
▴ 70
5
votes
5
replies
1.1k
views
best way to submit hpc job using snakemake
snakemake
8 months ago by
QX
▴ 70
1
vote
3
replies
518
views
snakemake config file with path
snakemake
updated 8 months ago by
pbioinf
▴ 140 • written 8 months ago by
QX
▴ 70
0
votes
2
replies
458
views
how to colorize snakemake editing text
snakemake
updated 8 months ago by
Michael
55k • written 8 months ago by
QX
▴ 70
3
votes
5
replies
1.2k
views
Calling variants/SNP for single-cell RNA-seq data
SNP
scRNAseq
updated 6 months ago by
yura.grabovska
▴ 740 • written 8 months ago by
QX
▴ 70
2
votes
1
reply
415
views
Split the fastqc file base on barcode
fastq
updated 9 months ago by
GenoMax
150k • written 9 months ago by
QX
▴ 70
2
votes
3
replies
694
views
bash for merging bam files by samtools
samtools
updated 9 months ago by
GenoMax
150k • written 9 months ago by
QX
▴ 70
5
votes
3
replies
878
views
chIP-seq vs ATACseq analysis
ATACseq
9 months ago by
QX
▴ 70
0
votes
1
reply
803
views
invalid class “Assay” object issue from Seurat
seurat
updated 9 months ago by
bk11
★ 3.0k • written 9 months ago by
QX
▴ 70
8
votes
3
replies
928
views
conda-like env for R
R
conda
updated 9 months ago by
dthorbur
★ 2.9k • written 9 months ago by
QX
▴ 70
2
votes
1
reply
431
views
Trimming from 151bp to 65bp
sequencing
data
updated 9 months ago by
GenoMax
150k • written 9 months ago by
QX
▴ 70
5
votes
11
replies
1.2k
views
6 follow
Asking for parallel jobs setting on HPC when analyzing sequencing data
HPC
parallel
updated 9 months ago by
Darked89
4.7k • written 9 months ago by
QX
▴ 70
4
votes
2
replies
757
views
cannot conda install macs3 on linux
atac
macs3
9 months ago by
QX
▴ 70
3
votes
5
replies
947
views
How to scrape BioMart data from https://sorfs.ugent.be/ website
BioMart
updated 9 months ago by
Pierre Lindenbaum
165k • written 10 months ago by
QX
▴ 70
3
votes
3
replies
733
views
Unexpected read length from NGS
NGS
Illumina
10 months ago by
QX
▴ 70
3
votes
4
replies
824
views
Why gatk VariantAnnotator required bam and coverage files
gatk
VariantAnnotator
10 months ago by
QX
▴ 70
0
votes
0
replies
251
views
Add geno header to VariantAnnotation objects
nichenet
scRNA-seq
11 months ago by
QX
▴ 70
0
votes
0
replies
233
views
NicheNet cell-cell communication analysis outcome
nichenet
scRNA-seq
11 months ago by
QX
▴ 70
2
votes
3
replies
866
views
Annotate genes from gtf file to vcf file
gtf
genomics
vcf
12 months ago by
QX
▴ 70
0
votes
1
reply
396
views
Adding gene to GRange objects with single base
GRanges
genomics
updated 12 months ago by
ATpoint
87k • written 12 months ago by
QX
▴ 70
0
votes
1
reply
368
views
SNP and Genes position matching dataframes in R
R
dataframe
updated 12 months ago by
dthorbur
★ 2.9k • written 12 months ago by
QX
▴ 70
2
votes
1
reply
346
views
Computing the neighborhood graph in single cell pipeline
single-cell
knn
updated 12 months ago by
ATpoint
87k • written 12 months ago by
QX
▴ 70
0
votes
2
replies
653
views
Visualize and access gvcf/vcf files
genomics
vcf
updated 8 months ago by
venkat
▴ 10 • written 12 months ago by
QX
▴ 70
0
votes
2
replies
1.4k
views
problem with importing mtx file in scanpy
scanpy
scRNAseq
14 months ago by
QX
▴ 70
1
vote
1
reply
590
views
Variant calling using HaplotypeCaller does not show #FILTER information
Variant-calling
GATK
HaplotypeCaller
WGS
updated 15 months ago by
Ram
45k • written 15 months ago by
QX
▴ 70
5
votes
2
replies
691
views
Execute R command on specific termimal
R
updated 15 months ago by
Ram
45k • written 15 months ago by
QX
▴ 70
3
votes
4
replies
1.4k
views
Downstream analysis with DEseq2 normalization
DEseq2
integration
16 months ago by
QX
▴ 70
4
votes
2
replies
760
views
Normalization function in DEseq2
DEseq2
16 months ago by
QX
▴ 70
0
votes
0
replies
378
views
What is the difference between CNV binning and aligning to gene?
CNV
transcriptomics
16 months ago by
QX
▴ 70
2
votes
1
reply
613
views
Integrate proteomics and scRNA-seq datasets
scRNA-seq
omics
protemics
updated 19 months ago by
bk11
★ 3.0k • written 19 months ago by
QX
▴ 70
3
votes
4
replies
1.0k
views
Integrate transcriptomics and CNV
CNV
omics
19 months ago by
QX
▴ 70
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