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0
votes
1
reply
11k
views
Comment:
C: What is wrong here with bbmap and java
9.9 years ago by
seta
★ 1.9k
0
votes
0
replies
11k
views
Comment:
C: What is wrong here with bbmap and java
9.9 years ago by
seta
★ 1.9k
1
vote
20
replies
11k
views
What is wrong here with bbmap and java
RNA-seq
alignment
java
bbmap
updated 3.2 years ago by
Ram
45k • written 9.9 years ago by
seta
★ 1.9k
0
votes
1
reply
3.4k
views
Comment:
C: 50PE vs 100PE reads to assemble a de novo transcriptome
10.0 years ago by
seta
★ 1.9k
0
votes
0
replies
2.3k
views
Finding genes involved in the KEGG pathway
transcriptome
annotation
KEGG-pathway
updated 3.2 years ago by
Ram
45k • written 10.0 years ago by
seta
★ 1.9k
0
votes
0
replies
3.8k
views
Comment:
C: GOstats for non model organism
10.0 years ago by
seta
★ 1.9k
6
votes
6
replies
3.9k
views
How to add a specific character into the specific location of header in fasta file?
sequence
header
updated 3.1 years ago by
Ram
45k • written 10.1 years ago by
seta
★ 1.9k
0
votes
0
replies
7.9k
views
Comment:
C: How to draw a coverage vs GC content plot for assembled transcriptome?
10.0 years ago by
seta
★ 1.9k
3
votes
8
replies
7.9k
views
How to draw a coverage vs GC content plot for assembled transcriptome?
plot
transcriptome assembly
coverage
GC content
updated 10.0 years ago by
Adrian Pelin
★ 2.7k • written 10.0 years ago by
seta
★ 1.9k
0
votes
0
replies
8.5k
views
Comment:
C: Please help me with samtools
10.0 years ago by
seta
★ 1.9k
0
votes
1
reply
3.4k
views
Comment:
C: Any experience with scaffolding using SSPACE tool
10.0 years ago by
seta
★ 1.9k
0
votes
3
replies
3.4k
views
Any experience with scaffolding using SSPACE tool
scaffold
Assembly
RNA-seq
bowtie
SSPACE
updated 3.2 years ago by
Ram
45k • written 10.0 years ago by
seta
★ 1.9k
0
votes
1
reply
20k
views
Comment:
C: How to remove contamination from the transcriptome assembly
10.0 years ago by
seta
★ 1.9k
3
votes
5
replies
18k
views
which one is better to do, blastx or blastp?
RNA-Seq
ORF
blast
alignment
updated 3.2 years ago by
Ram
45k • written 10.0 years ago by
seta
★ 1.9k
0
votes
1
reply
18k
views
Comment:
C: which one is better to do, blastx or blastp?
10.0 years ago by
seta
★ 1.9k
0
votes
0
replies
8.5k
views
Comment:
C: Please help me with samtools
10.0 years ago by
seta
★ 1.9k
0
votes
1
reply
8.5k
views
Comment:
C: Please help me with samtools
10.0 years ago by
seta
★ 1.9k
0
votes
1
reply
5.3k
views
Comment:
C: Any experience with GapFiller
10.0 years ago by
seta
★ 1.9k
3
votes
10
replies
5.3k
views
Any experience with GapFiller
GapFiller
Gap
bowtie
alignment
updated 3.2 years ago by
Ram
45k • written 10.0 years ago by
seta
★ 1.9k
0
votes
0
replies
5.3k
views
Comment:
C: Any experience with GapFiller
10.0 years ago by
seta
★ 1.9k
0
votes
1
reply
8.5k
views
Comment:
C: Please help me with samtools
10.0 years ago by
seta
★ 1.9k
2
votes
3
replies
2.5k
views
The sam ouput of bowtie2 is normal
bowtie2
alignment
BAM
updated 3.9 years ago by
Ram
45k • written 10.0 years ago by
seta
★ 1.9k
1
vote
2
replies
3.5k
views
Average insert size of PE library based on the bioanalyzer results
average insert size
paired end
RNA-seq
bioanalyzer
updated 10.0 years ago by
h.mon
35k • written 10.0 years ago by
seta
★ 1.9k
0
votes
2
replies
2.7k
views
Why there is some discrepancy between blastx and blastp outputs?
blastx
blastp
Transdecoder
alignment
updated 3.2 years ago by
Ram
45k • written 10.0 years ago by
seta
★ 1.9k
0
votes
0
replies
3.8k
views
Comment:
C: Mapping of a de novo assembled transcriptome to a genome of relative species
10.0 years ago by
seta
★ 1.9k
0
votes
0
replies
2.6k
views
Regarding the KEGG annotation using KAAS server
KAAS
KEGG-annotation
pathway-analysis
updated 4.0 years ago by
Ram
45k • written 10.0 years ago by
seta
★ 1.9k
0
votes
0
replies
2.7k
views
Answer:
A: Seeking help with transcriptome assembly
10.1 years ago by
seta
★ 1.9k
11
votes
5
replies
8.8k
views
how to remove asterisk characters from a translated sequences (fasta format)?
sequencing
Assembly
alignment
updated 3.2 years ago by
Ram
45k • written 10.2 years ago by
seta
★ 1.9k
2
votes
3
replies
4.3k
views
Is there any script to select longest ORF instead longest transcript from all assembled transcripts by Trinity?
RNA-Seq
Assembly
sequencing
sequence
updated 10.1 years ago by
x.jack.min
▴ 20 • written 10.4 years ago by
seta
★ 1.9k
1
vote
5
replies
4.9k
views
Getting all translated ORFs from 6 frame not just longest ones
blast
alignment
RNA-Seq
updated 3.5 years ago by
Ram
45k • written 10.7 years ago by
seta
★ 1.9k
1
vote
7
replies
7.6k
views
tool for enrichment analysis of miRNA
RNA-Seq
updated 3.7 years ago by
Ram
45k • written 10.9 years ago by
seta
★ 1.9k
2
votes
2
replies
3.1k
views
protein blast database in fasta format
fasta
blast
database
updated 3.2 years ago by
Ram
45k • written 10.1 years ago by
seta
★ 1.9k
5
votes
3
replies
3.2k
views
How to deal with many uncharacterized protein in the blastx results?
RNA-Seq
sequencing
Assembly
blast
updated 3.1 years ago by
Ram
45k • written 10.2 years ago by
seta
★ 1.9k
0
votes
1
reply
4.3k
views
Comment:
C: Local blastx against KEGG database
10.1 years ago by
seta
★ 1.9k
0
votes
2
replies
4.3k
views
Comment:
Comment: Local blastx against KEGG database
updated 3.2 years ago by
Ram
45k • written 10.1 years ago by
seta
★ 1.9k
0
votes
7
replies
4.3k
views
Local blastx against KEGG database
Local-homology-search
KEGG-database
blast
updated 3.2 years ago by
Ram
45k • written 10.1 years ago by
seta
★ 1.9k
0
votes
2
replies
1.5k
views
How to change the prefix name of query ID in the blastx results file (tabular format)?
blast
alignment
updated 3.2 years ago by
Ram
45k • written 10.1 years ago by
seta
★ 1.9k
0
votes
0
replies
2.2k
views
Comment:
C: What is "M" letter in the singlets output file generated by CAP3
10.1 years ago by
seta
★ 1.9k
0
votes
1
reply
2.2k
views
Comment:
Comment: What is "M" letter in the singlets output file generated by CAP3
updated 3.2 years ago by
Ram
45k • written 10.1 years ago by
seta
★ 1.9k
0
votes
1
reply
2.2k
views
Comment:
Comment: What is "M" letter in the singlets output file generated by CAP3
updated 3.2 years ago by
Ram
45k • written 10.1 years ago by
seta
★ 1.9k
0
votes
6
replies
2.2k
views
What is "M" letter in the singlets output file generated by CAP3
Assembly
CAP3
updated 3.2 years ago by
Ram
45k • written 10.1 years ago by
seta
★ 1.9k
1
vote
0
replies
5.0k
views
Comment:
C: RNA-seq normalization and differential expression
10.1 years ago by
seta
★ 1.9k
0
votes
1
reply
4.6k
views
Comment:
Comment: Read orientation originated from a library was made by dUTP method
updated 3.2 years ago by
Ram
45k • written 10.1 years ago by
seta
★ 1.9k
0
votes
1
reply
4.6k
views
Comment:
Comment: Read orientation originated from a library was made by dUTP method
updated 3.2 years ago by
Ram
45k • written 10.1 years ago by
seta
★ 1.9k
0
votes
5
replies
4.6k
views
Read orientation originated from a library was made by dUTP method
strand-specific
dUTP
NGS
read-orientation
updated 3.2 years ago by
Ram
45k • written 10.1 years ago by
seta
★ 1.9k
0
votes
0
replies
1.7k
views
how come that blastx with XML output format was done at reasonable time?
sequencing
blastx
alignment
updated 3.2 years ago by
Ram
45k • written 10.1 years ago by
seta
★ 1.9k
0
votes
1
reply
6.0k
views
Comment:
C: Species distribution in the blast output
10.1 years ago by
seta
★ 1.9k
2
votes
23
replies
6.0k
views
Species distribution in the blast output
species-distribution
sequence
blast
alignment
updated 3.2 years ago by
Ram
45k • written 10.1 years ago by
seta
★ 1.9k
0
votes
0
replies
1.7k
views
Comment:
Comment: Find whole protein sequences for a spiece
updated 3.2 years ago by
Ram
45k • written 10.1 years ago by
seta
★ 1.9k
0
votes
0
replies
3.9k
views
Comment:
C: How to add a specific character into the specific location of header in fasta fi
10.1 years ago by
seta
★ 1.9k
868 results • Page
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