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1
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2
replies
4.9k
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Classify cells using seurat
scRNA seurat monocle
updated 7.3 years ago by ▴ 110 • written 7.6 years ago by ▴ 390
1
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0
replies
4.3k
views
Answer: A: KEGGREST: how to retrieve compound list by pathway ID
7.5 years ago by AB ▴ 390
0
votes
1
reply
3.2k
views
Answer: A: How to extract PRDM9 binding motifs in bed format?
7.5 years ago by AB ▴ 390
1
vote
0
replies
3.4k
views
Answer: A: Protein-protein Docking Software?
7.5 years ago by AB ▴ 390
6
votes
3
replies
6.3k
views
Log transformation of RPKM data for PCA analysis
RNA-Seq rpkm PCA log-transformation
updated 3.1 years ago by 45k • written 9.9 years ago by ▴ 390
2
votes
2
replies
5.4k
views
Vcf-compare two multi-sample vcf files
vcf-compare vcftools
updated 7.7 years ago by ▴ 10 • written 8.4 years ago by ▴ 390
0
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0
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13k
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Answer: C: converting vcf to text file
7.9 years ago by AB ▴ 390
0
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2
replies
13k
views
Comment: C: converting vcf to text file
updated 7.9 years ago by 166k • written 7.9 years ago by ▴ 390
6
votes
6
replies
3.4k
views
UCSC Fasta files by chromosome for rn6
ucsc fasta rn6
updated 7.9 years ago by ▴ 580 • written 7.9 years ago by ▴ 390
0
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0
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3.4k
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Comment: C: UCSC Fasta files by chromosome for rn6
7.9 years ago by AB ▴ 390
3
votes
3
replies
3.6k
views
running multiple RSeQC jobs
RNA-Seq RSeQC tin.py
updated 8.1 years ago by 20 • written 8.3 years ago by ▴ 390
1
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1
reply
6.3k
views
Comment: C: How to increase point size or color palette of a PCA plot using the scater packa
8.2 years ago by AB ▴ 390
2
votes
3
replies
6.3k
views
How to increase point size or color palette of a PCA plot using the scater package for scRNA analysis
scater plotPCA
8.2 years ago by AB ▴ 390
0
votes
0
replies
1.3k
views
Going from Snps to exons to protein domains
snps proteindomains variant Effect Predictor
8.4 years ago by AB ▴ 390
1
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1
reply
2.4k
views
Answer: A: NGS data analysis
8.4 years ago by AB ▴ 390
0
votes
2
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37k
views
"Error in contrib.url(repos, type) : trying to use CRAN without setting a mirror" Error when installing package
R shiny-server
8.4 years ago by AB ▴ 390
0
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0
replies
37k
views
Answer: A: "Error in contrib.url(repos, type) : trying to use CRAN without setting a mirror
8.4 years ago by AB ▴ 390
0
votes
0
replies
3.3k
views
Answer: A: extract SNP, variants
8.4 years ago by AB ▴ 390
2
votes
5
replies
5.9k
views
Picard MergeSam error : Cannot use index file with textual SAM file
picard mergesam
8.5 years ago by AB ▴ 390
0
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1
reply
5.9k
views
Comment: A: Picard MergeSam error : Cannot use index file with textual SAM file
8.5 years ago by AB ▴ 390
0
votes
1
reply
5.9k
views
Comment: C: Picard MergeSam error : Cannot use index file with textual SAM file
8.5 years ago by AB ▴ 390
0
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0
replies
2.4k
views
Comment: C: bam-readcount : Reference_base is not the base with highest count
8.5 years ago by AB ▴ 390
4
votes
3
replies
2.4k
views
bam-readcount : Reference_base is not the base with highest count
bam-readcount
updated 8.5 years ago by 6.2k • written 8.5 years ago by ▴ 390
0
votes
0
replies
2.1k
views
Very high negative scores from bigWigAverageOverBed
ChIP-Seq bigWigAverageOverBed
updated 8.9 years ago by 20 • written 9.0 years ago by ▴ 390
0
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0
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3.5k
views
Comment: C: Finding distribution of indels from vcf file
9.0 years ago by AB ▴ 390
4
votes
2
replies
3.5k
views
Finding distribution of indels from vcf file
vcf samtools barplots
updated 9.0 years ago by ★ 3.8k • written 9.0 years ago by ▴ 390
0
votes
0
replies
2.0k
views
What is a good cutoff of mappability score from bigWigAverageOverBed ?
ChIP-Seq bigWigAverageOverBed
9.0 years ago by AB ▴ 390
0
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1
reply
3.8k
views
Comment: C: what do negative values from bigWigAverageOverBed output mean?
9.0 years ago by AB ▴ 390
2
votes
3
replies
3.8k
views
what do negative values from bigWigAverageOverBed output mean?
ChIP-Seq bigWigAverageOverBed deepTools
updated 9.0 years ago by 105k • written 9.0 years ago by ▴ 390
1
vote
1
reply
2.7k
views
Calculating FPKM of reads that overlap regions of interest
ChIP-Seq fpkm bedtools
9.1 years ago by AB ▴ 390
9
votes
2
replies
5.5k
views
MACS2 Peak Calling : Different number of peaks for each replicate
ChIP-Seq biological-replicates MACS2
updated 3.1 years ago by 45k • written 9.6 years ago by ▴ 390
0
votes
1
reply
2.0k
views
Finding out if non-coding transcripts from CPAT are tissue specific?
RNA-Seq CPAT lncRNA
updated 3.2 years ago by 45k • written 9.6 years ago by ▴ 390
3
votes
6
replies
4.4k
views
Differential binding analysis of motif-containing peaks
ChIP-Seq FIMO DiffBind
updated 3.2 years ago by 45k • written 9.6 years ago by ▴ 390
0
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0
replies
4.4k
views
Comment: A: Differential binding analysis of motif-containing peaks
9.6 years ago by AB ▴ 390
0
votes
0
replies
4.4k
views
Comment: C: Differential binding analysis of motif-containing peaks
9.6 years ago by AB ▴ 390
1
vote
3
replies
2.2k
views
Determine Condition using LogFC values
RNA-Seq fold-changes
updated 3.1 years ago by 45k • written 9.7 years ago by ▴ 390
0
votes
1
reply
3.6k
views
Removing batch effects from RPKM data
limma removeBatchEffect batch-effect rpkm
updated 17 months ago by 45k • written 9.9 years ago by ▴ 390
0
votes
1
reply
11k
views
Comment: C: PCA plot of RPKM data from RNA-Seq dataset
9.9 years ago by AB ▴ 390
13
votes
6
replies
11k
views
PCA plot of RPKM data from RNA-Seq dataset
RNA-Seq bioconductor pca rpkm
updated 9.9 years ago by ▴ 760 • written 9.9 years ago by ▴ 390
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